Aghilas Akkache, Lisa Clavier, Oleh Mezhenskyi, Kateryna Andriienkova, Thibaut Soubrié, Philippe Lavalle, Nihal Engin Vrana, Varvara Gribova
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引用次数: 0
摘要
在生物材料开发过程中,创造具有理想特性的材料是一个耗时耗力、资源密集型的过程,往往依赖于偶然的发现。加速这一过程的潜在途径是采用人工智能方法,如机器学习(ML)。本文探讨了利用简化的炎症模型和受限数据集预测聚合物抗炎特性的可能性。以小鼠巨噬细胞系 RAW 264.7 为模型,对 50 种不同聚合物进行了细胞试验。这些实验生成的数据集用于开发基于贝叶斯逻辑回归的 ML 模型。在进行贝叶斯逻辑回归分析后,采用 K-nearest neighbors (KNN) 和 Naïve Bayes 两种 ML 模型来预测抗炎聚合物的特性。研究发现,如果聚合物是多阳离子,则其具有抗炎特性的概率会乘以 3,而一氧化氮分泌是确定聚合物抗炎特性的良好指标,在本研究中,抗炎特性是指肿瘤坏死因子 alpha 表达的减少。总之,这项研究表明,通过适当的数据集设计,ML 技术可以提供有关功能聚合物特性的宝贵信息,从而实现更快、更高效的生物材料开发。
Machine Learning-Based Prediction of Immunomodulatory Properties of Polymers: Toward a Faster and Easier Development of Anti-Inflammatory Biomaterials
In biomaterials development, creating materials with desirable properties can be a time-consuming and resource-intensive process, often relying on serendipitous discoveries. A potential route to accelerate this process is to employ artificial intelligence methodologies such as machine learning (ML). Herein, the possibility to predict anti-inflammatory properties of the polymers by using a simplified model of inflammation and a restrained dataset is explored. Cellular assays with 50 different polymers are conducted using the murine macrophage cell line RAW 264.7 as a model. These experiments generate a dataset which is used to develop a ML model based on Bayesian logistic regression. After conducting a Bayesian logistic regression analysis, two ML models, K-nearest neighbors (KNN) and Naïve Bayes, are employed to predict anti-inflammatory polymers properties. The study finds that the probability of a polymer having anti-inflammatory properties is multiplied by three if it is a polycation, and that nitric oxide secretion is a good indicator in determining the anti-inflammatory properties of a polymer, which in this work are defined by tumor necrosis factor alpha expression decrease. Overall, the study suggests that with appropriate dataset design, ML techniques can provide valuable information on functional polymer properties, enabling faster and more efficient biomaterial development.
期刊介绍:
Advanced NanoBiomed Research will provide an Open Access home for cutting-edge nanomedicine, bioengineering and biomaterials research aimed at improving human health. The journal will capture a broad spectrum of research from increasingly multi- and interdisciplinary fields of the traditional areas of biomedicine, bioengineering and health-related materials science as well as precision and personalized medicine, drug delivery, and artificial intelligence-driven health science.
The scope of Advanced NanoBiomed Research will cover the following key subject areas:
▪ Nanomedicine and nanotechnology, with applications in drug and gene delivery, diagnostics, theranostics, photothermal and photodynamic therapy and multimodal imaging.
▪ Biomaterials, including hydrogels, 2D materials, biopolymers, composites, biodegradable materials, biohybrids and biomimetics (such as artificial cells, exosomes and extracellular vesicles), as well as all organic and inorganic materials for biomedical applications.
▪ Biointerfaces, such as anti-microbial surfaces and coatings, as well as interfaces for cellular engineering, immunoengineering and 3D cell culture.
▪ Biofabrication including (bio)inks and technologies, towards generation of functional tissues and organs.
▪ Tissue engineering and regenerative medicine, including scaffolds and scaffold-free approaches, for bone, ligament, muscle, skin, neural, cardiac tissue engineering and tissue vascularization.
▪ Devices for healthcare applications, disease modelling and treatment, such as diagnostics, lab-on-a-chip, organs-on-a-chip, bioMEMS, bioelectronics, wearables, actuators, soft robotics, and intelligent drug delivery systems.
with a strong focus on applications of these fields, from bench-to-bedside, for treatment of all diseases and disorders, such as infectious, autoimmune, cardiovascular and metabolic diseases, neurological disorders and cancer; including pharmacology and toxicology studies.