Yue Liu, Jack C. Koch, Lucía Arregui, Allyssa Oune, Sarah Bodenstein, Maria T. Gutierrez-Wing, Terrence R. Tiersch
{"title":"利用水生模式物种探索开放式硬件生态系统的路径,以保护生物医学研究界的遗传资源。","authors":"Yue Liu, Jack C. Koch, Lucía Arregui, Allyssa Oune, Sarah Bodenstein, Maria T. Gutierrez-Wing, Terrence R. Tiersch","doi":"10.1002/jez.b.23234","DOIUrl":null,"url":null,"abstract":"<p>Development of reliable germplasm repositories is critical for preservation of genetic resources of aquatic species, which are widely utilized to support biomedical innovation by providing a foundational source for naturally occurring variation and development of new variants through genetic manipulations. A significant barrier in repository development is the lack of cryopreservation capability and reproducibility across the research community, posing great risks of losing advances developed from billions of dollars of research investment. The emergence of open scientific hardware has fueled a new movement across biomedical research communities. With the increasing accessibility of consumer-level fabrication technologies, such as three-dimensional printers, open hardware devices can be custom designed, and design files distributed to community members for enhancing rigor, reproducibility, and standardization. The overall goal of this review is to explore pathways to create open-hardware ecosystems among the communities using aquatic model resources for biomedical research. To gain feedback and insights from community members, an interactive workshop focusing on open-hardware applications in germplasm repository development was held at the 2022 Aquatic Models for Human Disease Conference, Woods Hole, Massachusetts. This work integrates conceptual strategies with practical insights derived from workshop interactions using examples of germplasm repository development. These insights can be generalized for establishment of open-hardware ecosystems for a broad biomedical research community. The specific objectives were to: (1) introduce an open-hardware ecosystem concept to support biomedical research; (2) explore pathways toward open-hardware ecosystems through four major areas, and (3) identify opportunities and future directions.</p>","PeriodicalId":15682,"journal":{"name":"Journal of experimental zoology. Part B, Molecular and developmental evolution","volume":"342 3","pages":"278-290"},"PeriodicalIF":1.8000,"publicationDate":"2024-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring pathways toward open-hardware ecosystems to safeguard genetic resources for biomedical research communities using aquatic model species\",\"authors\":\"Yue Liu, Jack C. Koch, Lucía Arregui, Allyssa Oune, Sarah Bodenstein, Maria T. Gutierrez-Wing, Terrence R. Tiersch\",\"doi\":\"10.1002/jez.b.23234\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Development of reliable germplasm repositories is critical for preservation of genetic resources of aquatic species, which are widely utilized to support biomedical innovation by providing a foundational source for naturally occurring variation and development of new variants through genetic manipulations. A significant barrier in repository development is the lack of cryopreservation capability and reproducibility across the research community, posing great risks of losing advances developed from billions of dollars of research investment. The emergence of open scientific hardware has fueled a new movement across biomedical research communities. With the increasing accessibility of consumer-level fabrication technologies, such as three-dimensional printers, open hardware devices can be custom designed, and design files distributed to community members for enhancing rigor, reproducibility, and standardization. The overall goal of this review is to explore pathways to create open-hardware ecosystems among the communities using aquatic model resources for biomedical research. To gain feedback and insights from community members, an interactive workshop focusing on open-hardware applications in germplasm repository development was held at the 2022 Aquatic Models for Human Disease Conference, Woods Hole, Massachusetts. This work integrates conceptual strategies with practical insights derived from workshop interactions using examples of germplasm repository development. These insights can be generalized for establishment of open-hardware ecosystems for a broad biomedical research community. 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Exploring pathways toward open-hardware ecosystems to safeguard genetic resources for biomedical research communities using aquatic model species
Development of reliable germplasm repositories is critical for preservation of genetic resources of aquatic species, which are widely utilized to support biomedical innovation by providing a foundational source for naturally occurring variation and development of new variants through genetic manipulations. A significant barrier in repository development is the lack of cryopreservation capability and reproducibility across the research community, posing great risks of losing advances developed from billions of dollars of research investment. The emergence of open scientific hardware has fueled a new movement across biomedical research communities. With the increasing accessibility of consumer-level fabrication technologies, such as three-dimensional printers, open hardware devices can be custom designed, and design files distributed to community members for enhancing rigor, reproducibility, and standardization. The overall goal of this review is to explore pathways to create open-hardware ecosystems among the communities using aquatic model resources for biomedical research. To gain feedback and insights from community members, an interactive workshop focusing on open-hardware applications in germplasm repository development was held at the 2022 Aquatic Models for Human Disease Conference, Woods Hole, Massachusetts. This work integrates conceptual strategies with practical insights derived from workshop interactions using examples of germplasm repository development. These insights can be generalized for establishment of open-hardware ecosystems for a broad biomedical research community. The specific objectives were to: (1) introduce an open-hardware ecosystem concept to support biomedical research; (2) explore pathways toward open-hardware ecosystems through four major areas, and (3) identify opportunities and future directions.
期刊介绍:
Developmental Evolution is a branch of evolutionary biology that integrates evidence and concepts from developmental biology, phylogenetics, comparative morphology, evolutionary genetics and increasingly also genomics, systems biology as well as synthetic biology to gain an understanding of the structure and evolution of organisms.
The Journal of Experimental Zoology -B: Molecular and Developmental Evolution provides a forum where these fields are invited to bring together their insights to further a synthetic understanding of evolution from the molecular through the organismic level. Contributions from all these branches of science are welcome to JEZB.
We particularly encourage submissions that apply the tools of genomics, as well as systems and synthetic biology to developmental evolution. At this time the impact of these emerging fields on developmental evolution has not been explored to its fullest extent and for this reason we are eager to foster the relationship of systems and synthetic biology with devo evo.