新型 N4 类噬菌体 vB_SupP_AX 的基因组分析。

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
ACS Applied Bio Materials Pub Date : 2024-08-01 Epub Date: 2024-01-08 DOI:10.1007/s10123-023-00476-5
Yundan Liu, Chengrui Zhu, Yantao Liang, Andrew McMinn, Kaiyang Zheng, Ziyue Wang, Hongmin Wang, Linyi Ren, Hongbing Shao, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Min Wang
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引用次数: 0

摘要

亚硫酸盐杆菌是一种公认的能产生不依赖于 AMP 的亚硫酸盐氧化酶的细菌,这种氧化酶在制造亚硫酸盐生物传感器方面发挥着重要作用。这种能力凸显了它在生态和经济方面的重要性。在本研究中,我们介绍了一种新发现的噬菌体--硫酸杆菌噬菌体 vB_SupP_AX,它是从中国青岛麦岛分离出来的。vB_SupP_AX 基因组为线性双链,长度为 75,445 bp,GC 含量为 49%。它包括四个转运核糖核酸(tRNA)序列和 79 个开放阅读框(ORF),其中一个是编码硫代氧化酶的辅助代谢基因。与其他类似 N4 的噬菌体一样,vB_SupP_AX 拥有三种不同的 RNA 聚合酶,并以存在四个 tRNA 分子为特征。比较基因组学和系统发生学分析将 vB_SupP_AX 和集成微生物基因组/病毒 v4 数据库中的其他三个病毒基因组定位在 Rhodovirinae 病毒亚家族中。vB_SupP_AX 的鉴定加深了我们对海洋生态系统中病毒-宿主相互作用的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Genome analysis of vB_SupP_AX, a novel N4-like phage infecting Sulfitobacter.

Genome analysis of vB_SupP_AX, a novel N4-like phage infecting Sulfitobacter.

Sulfitobacter is a bacterium recognized for its production of AMP-independent sulfite oxidase, which is instrumental in the creation of sulfite biosensors. This capability underscores its ecological and economic relevance. In this study, we present a newly discovered phage, Sulfitobacter phage vB_SupP_AX, which was isolated from Maidao of Qingdao, China. The vB_SupP_AX genome is linear and double-stranded and measures 75,445 bp with a GC content of 49%. It encompasses four transfer RNA (tRNA) sequences and 79 open reading frames (ORFs), one of which is an auxiliary metabolic gene encoding thioredoxin. Consistent with other N4-like phages, vB_SupP_AX possesses three distinct RNA polymerases and is characterized by the presence of four tRNA molecules. Comparative genomic and phylogenetic analyses position vB_SupP_AX and three other viral genomes from the Integrated Microbial Genomes/Virus v4 database within the Rhodovirinae virus subfamily. The identification of vB_SupP_AX enhances our understanding of virus-host interactions within marine ecosystems.

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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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