{"title":"与底物和产物结合的甲烷球菌二氢烟酸酶","authors":"J. Vitali, Jay C. Nix, H. Newman, M. Colaneri","doi":"10.1107/s2053273323096705","DOIUrl":null,"url":null,"abstract":"Dihydroorotase (DHOase) catalyzes the reversible cyclization of N -carbamoyl-L-aspartate (CA) to L-dihydroorotate (DHO) in the third step of de novo pyrimidine biosy nthesis. Here we report the x - ray structural analysis of DHOase from Methanococcus jannaschii co-crystallized with DHO at pH 6.5. The crystals are isomorphous with the crystals of the apoenzyme (Vitali et al, 2023) with space group P3 221 and a = b = 111.4 Å, c = 101.2 Å. The structure was refined to R = 0.159 and Rfree = 0.176 at a resolution of 1.87 Å. The electron density in the active site corresponds to the average of the substrate (CA) and product (DHO) superimposed, and this is consistent with the reversibility of the reaction.","PeriodicalId":6903,"journal":{"name":"Acta Crystallographica Section A Foundations and Advances","volume":"26 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dihydroorotase from Methanococcus jannaschii with substrate and product bound\",\"authors\":\"J. Vitali, Jay C. Nix, H. Newman, M. Colaneri\",\"doi\":\"10.1107/s2053273323096705\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Dihydroorotase (DHOase) catalyzes the reversible cyclization of N -carbamoyl-L-aspartate (CA) to L-dihydroorotate (DHO) in the third step of de novo pyrimidine biosy nthesis. Here we report the x - ray structural analysis of DHOase from Methanococcus jannaschii co-crystallized with DHO at pH 6.5. The crystals are isomorphous with the crystals of the apoenzyme (Vitali et al, 2023) with space group P3 221 and a = b = 111.4 Å, c = 101.2 Å. The structure was refined to R = 0.159 and Rfree = 0.176 at a resolution of 1.87 Å. The electron density in the active site corresponds to the average of the substrate (CA) and product (DHO) superimposed, and this is consistent with the reversibility of the reaction.\",\"PeriodicalId\":6903,\"journal\":{\"name\":\"Acta Crystallographica Section A Foundations and Advances\",\"volume\":\"26 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-07-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Crystallographica Section A Foundations and Advances\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1107/s2053273323096705\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section A Foundations and Advances","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1107/s2053273323096705","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
二氢烟酸酶(DHOase)催化 N -氨基甲酰-L-天冬氨酸(CA)与 L-二氢烟酸(DHO)的可逆环化,这是嘧啶从头生物合成的第三步。在此,我们报告了在 pH 值为 6.5 的条件下,对来自梅氏球菌(Methanococcus jannaschii)的 DHO 酶与 DHO 的共晶体进行的 X 射线结构分析。晶体与同源酶(Vitali et al, 2023)的晶体同构,空间群为 P3 221,a = b = 111.4 Å,c = 101.2 Å。该结构的分辨率为 1.87 Å,R = 0.159,Rfree = 0.176。
Dihydroorotase from Methanococcus jannaschii with substrate and product bound
Dihydroorotase (DHOase) catalyzes the reversible cyclization of N -carbamoyl-L-aspartate (CA) to L-dihydroorotate (DHO) in the third step of de novo pyrimidine biosy nthesis. Here we report the x - ray structural analysis of DHOase from Methanococcus jannaschii co-crystallized with DHO at pH 6.5. The crystals are isomorphous with the crystals of the apoenzyme (Vitali et al, 2023) with space group P3 221 and a = b = 111.4 Å, c = 101.2 Å. The structure was refined to R = 0.159 and Rfree = 0.176 at a resolution of 1.87 Å. The electron density in the active site corresponds to the average of the substrate (CA) and product (DHO) superimposed, and this is consistent with the reversibility of the reaction.