机器学习力场在药物设计中的应用。

IF 10.9 1区 医学 Q1 CHEMISTRY, MEDICINAL
Mingan Chen, Xinyu Jiang, Lehan Zhang, Xiaoxu Chen, Yiming Wen, Zhiyong Gu, Xutong Li, Mingyue Zheng
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引用次数: 0

摘要

在用于药物设计的分子模拟领域,传统的分子力学力场和量子化学理论发挥了重要作用,但在可扩展性和计算效率方面却受到了限制。为了克服这些局限性,机器学习力场(MLFFs)作为一种强大的工具应运而生,它能够兼顾准确性和效率。机器学习力场依靠分子结构与势能之间的关系,绕过了对相互作用表征的先入为主的概念。其准确性取决于所使用的机器学习模型以及训练数据集的质量和数量。随着等变神经网络和高质量数据集的最新进展,MLFF 的性能有了显著提高。本综述探讨了 MLFF,强调了其在药物设计中的潜力。它阐明了 MLFF 的原理,提供了开发和验证指南,并重点介绍了 MLFF 的成功实施。它还探讨了开发和应用 MLFF 可能面临的挑战。综述最后阐明了 MLFF 的前进道路,概述了需要克服的挑战和需要利用的机遇。这激励研究人员在研究中将 MLFFs 作为药物设计中进行分子模拟的新工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The emergence of machine learning force fields in drug design

In the field of molecular simulation for drug design, traditional molecular mechanic force fields and quantum chemical theories have been instrumental but limited in terms of scalability and computational efficiency. To overcome these limitations, machine learning force fields (MLFFs) have emerged as a powerful tool capable of balancing accuracy with efficiency. MLFFs rely on the relationship between molecular structures and potential energy, bypassing the need for a preconceived notion of interaction representations. Their accuracy depends on the machine learning models used, and the quality and volume of training data sets. With recent advances in equivariant neural networks and high-quality datasets, MLFFs have significantly improved their performance. This review explores MLFFs, emphasizing their potential in drug design. It elucidates MLFF principles, provides development and validation guidelines, and highlights successful MLFF implementations. It also addresses potential challenges in developing and applying MLFFs. The review concludes by illuminating the path ahead for MLFFs, outlining the challenges to be overcome and the opportunities to be harnessed. This inspires researchers to embrace MLFFs in their investigations as a new tool to perform molecular simulations in drug design.

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来源期刊
CiteScore
29.30
自引率
0.00%
发文量
52
审稿时长
2 months
期刊介绍: Medicinal Research Reviews is dedicated to publishing timely and critical reviews, as well as opinion-based articles, covering a broad spectrum of topics related to medicinal research. These contributions are authored by individuals who have made significant advancements in the field. Encompassing a wide range of subjects, suitable topics include, but are not limited to, the underlying pathophysiology of crucial diseases and disease vectors, therapeutic approaches for diverse medical conditions, properties of molecular targets for therapeutic agents, innovative methodologies facilitating therapy discovery, genomics and proteomics, structure-activity correlations of drug series, development of new imaging and diagnostic tools, drug metabolism, drug delivery, and comprehensive examinations of the chemical, pharmacological, pharmacokinetic, pharmacodynamic, and clinical characteristics of significant drugs.
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