{"title":"综合生物信息学分析确定肺腺癌患者中与免疫相关的上皮-间质转化预后生物标志物和免疫浸润","authors":"Yu Huang, Peng Zhang, Shu-Chang Zhou, Qing Liu","doi":"10.1097/ot9.0000000000000008","DOIUrl":null,"url":null,"abstract":"\n \n \n Lung cancer, particularly lung adenocarcinoma (LUAD), is highly lethal. Understanding the critical interaction between epithelial-mesenchymal transition (EMT) and the immune status of patients is imperative for clinical assessment.\n \n \n \n We conducted bioinformatics analysis to identify potential immune-related EMT (iEMT) prognostic genes and explored the immune status in LUAD. Using data from The Cancer Genome Atlas and GSE68465, differentially expressed genes, were identified, and a risk model was constructed. Cluster analysis was conducted using the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways.\n \n \n \n Our findings revealed 69 differentially expressed iEMT genes, with risk values demonstrating independent prognostic significance for both The Cancer Genome Atlas and GSE68465 samples. The risk value was positively correlated with tumor stage. Immune cell infiltration analysis showed a significant decrease in resting dendritic cells and an increase in CD4 memory T cells in high-risk groups with poor survival prognoses. The immunotherapy analysis revealed weak immunotherapeutic effects in the high-risk group.\n \n \n \n This study provides insights into potential aberrant differential iEMT genes and risk models and explores immune landscapes that inform personalized immunotherapy in patients with LUAD.\n","PeriodicalId":345149,"journal":{"name":"Oncology and Translational Medicine","volume":"3 10","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Integrated bioinformatics analysis identifies immune-related epithelial-mesenchymal transition prognostic biomarkers and immune infiltrates in patients with lung adenocarcinoma\",\"authors\":\"Yu Huang, Peng Zhang, Shu-Chang Zhou, Qing Liu\",\"doi\":\"10.1097/ot9.0000000000000008\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n \\n \\n Lung cancer, particularly lung adenocarcinoma (LUAD), is highly lethal. Understanding the critical interaction between epithelial-mesenchymal transition (EMT) and the immune status of patients is imperative for clinical assessment.\\n \\n \\n \\n We conducted bioinformatics analysis to identify potential immune-related EMT (iEMT) prognostic genes and explored the immune status in LUAD. Using data from The Cancer Genome Atlas and GSE68465, differentially expressed genes, were identified, and a risk model was constructed. Cluster analysis was conducted using the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways.\\n \\n \\n \\n Our findings revealed 69 differentially expressed iEMT genes, with risk values demonstrating independent prognostic significance for both The Cancer Genome Atlas and GSE68465 samples. The risk value was positively correlated with tumor stage. Immune cell infiltration analysis showed a significant decrease in resting dendritic cells and an increase in CD4 memory T cells in high-risk groups with poor survival prognoses. The immunotherapy analysis revealed weak immunotherapeutic effects in the high-risk group.\\n \\n \\n \\n This study provides insights into potential aberrant differential iEMT genes and risk models and explores immune landscapes that inform personalized immunotherapy in patients with LUAD.\\n\",\"PeriodicalId\":345149,\"journal\":{\"name\":\"Oncology and Translational Medicine\",\"volume\":\"3 10\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-12-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Oncology and Translational Medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1097/ot9.0000000000000008\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Oncology and Translational Medicine","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1097/ot9.0000000000000008","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
肺癌,尤其是肺腺癌(LUAD)的致死率很高。了解上皮-间质转化(EMT)与患者免疫状态之间的关键相互作用对于临床评估至关重要。 我们进行了生物信息学分析,以确定潜在的免疫相关EMT(iEMT)预后基因,并探索LUAD的免疫状态。我们利用癌症基因组图谱(The Cancer Genome Atlas)和GSE68465中的数据确定了差异表达基因,并构建了风险模型。利用基因本体和京都基因组百科全书途径进行了聚类分析。 我们的研究结果表明,在癌症基因组图谱和 GSE68465 样本中,有 69 个 iEMT 差异表达基因的风险值具有独立的预后意义。风险值与肿瘤分期呈正相关。免疫细胞浸润分析显示,在生存预后较差的高危人群中,静息树突状细胞显著减少,CD4 记忆 T 细胞增加。免疫治疗分析显示,高危组中的免疫治疗效果较弱。 这项研究深入揭示了潜在的异常差异iEMT基因和风险模型,并探索了免疫景观,为LUAD患者的个性化免疫疗法提供了依据。
Integrated bioinformatics analysis identifies immune-related epithelial-mesenchymal transition prognostic biomarkers and immune infiltrates in patients with lung adenocarcinoma
Lung cancer, particularly lung adenocarcinoma (LUAD), is highly lethal. Understanding the critical interaction between epithelial-mesenchymal transition (EMT) and the immune status of patients is imperative for clinical assessment.
We conducted bioinformatics analysis to identify potential immune-related EMT (iEMT) prognostic genes and explored the immune status in LUAD. Using data from The Cancer Genome Atlas and GSE68465, differentially expressed genes, were identified, and a risk model was constructed. Cluster analysis was conducted using the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways.
Our findings revealed 69 differentially expressed iEMT genes, with risk values demonstrating independent prognostic significance for both The Cancer Genome Atlas and GSE68465 samples. The risk value was positively correlated with tumor stage. Immune cell infiltration analysis showed a significant decrease in resting dendritic cells and an increase in CD4 memory T cells in high-risk groups with poor survival prognoses. The immunotherapy analysis revealed weak immunotherapeutic effects in the high-risk group.
This study provides insights into potential aberrant differential iEMT genes and risk models and explores immune landscapes that inform personalized immunotherapy in patients with LUAD.