不同温度下富氮分子在精氨酸同分异构体选择中的作用

IF 1.2 4区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Aned De Leon, Jose Luis Cabellos, Cesar Castillo-Quevedo, Martha Fabiola Martin-Del-Campo-Solis, Gerardo Martínez-Guajardo
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引用次数: 0

摘要

众所周知,精氨酸中的胍基在非共价相互作用中发挥着重要作用。然而,由于其全局最小结构的选择仍存在争议,因此其作用并没有得到很好的记录。获得准确结果的主要困难在于:中性精氨酸可以有三种形式,其中两种是典型形式,一种是齐聚物形式;每种形式都有退化的对映体 D- 和 L-;其自由度众多,对其进行深入研究具有挑战性;短程相互作用需要更高层次的理论才能正确描述。因此,我们进行了细致的全局最小值搜索。我们在 PBE0 /Def2TZVP 理论水平上对系统进行了优化,在 DLPNO-CCSD(T)/Def2TZVP 水平上进行了单点计算,并在 PBE0 /Def2TZVP 水平上进行了零点修正。我们还分析了系统的热流行和红外光谱,以全面了解精氨酸的行为。结果表明,能量最小值结构主要依赖于其内部的富氮基团。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Role of Nitrogen-Rich Moieties in the Selection of Arginine's Tautomeric Form at Different Temperatures.

It is well known that the guanidinium group in Arginine plays an important role in noncovalent interactions. However, its role is not well documented since the selection of its global minimum structure is still controversial. The main difficulties on obtaining accurate results lie on:  neutral Arginine can occur in 3 forms, two of which are canonical and one is zwitterion; each form has degenerate enantiomers D- and L-; its numerous degrees of freedom make it challenging to perform a thorough study; the short-range interactions require higher levels of theory to correctly describe them. Thus, we have performed a meticulous global minimum search. We performed optimizations of the systems at the PBE0 /Def2TZVP level of theory and single point calculations at the DLPNO-CCSD(T)/Def2TZVP level with zero-point corrections at PBE0 /Def2TZVP. We also analyzed Thermal Populations and IR Spectra of the systems to fully understand Arginine's behavior. The results show the energy minima structures strongly rely on its internal nitrogen-rich groups.

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来源期刊
Acta Chimica Slovenica
Acta Chimica Slovenica 化学-化学综合
CiteScore
2.50
自引率
25.00%
发文量
80
审稿时长
1.0 months
期刊介绍: Is an international, peer-reviewed and Open Access journal. It provides a forum for the publication of original scientific research in all fields of chemistry and closely related areas. Reviews, feature, scientific and technical articles, and short communications are welcome.
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