Sungsool Wi, Conggang Li, Karen Pham, Woonghee Lee, Lucio Frydman
{"title":"通过新型固态双极混合方案实现肽基之间的短程和长程二维 15N-15N NMR 关联性","authors":"Sungsool Wi, Conggang Li, Karen Pham, Woonghee Lee, Lucio Frydman","doi":"10.1007/s10858-023-00429-0","DOIUrl":null,"url":null,"abstract":"<div><p>A recently developed homonuclear dipolar recoupling scheme, Adiabatic Linearly FREquency Swept reCOupling (AL FRESCO), was applied to record two-dimensional (2D) <sup>15</sup>N–<sup>15</sup>N correlations on uniformly <sup>15</sup>N-labeled GB1 powders. A major feature exploited in these <sup>15</sup>N–<sup>15</sup>N correlations was AL FRESCO’s remarkably low RF power demands, which enabled seconds-long mixing schemes when establishing direct correlations. These <sup>15</sup>N–<sup>15</sup>N mixing schemes proved efficient regardless of the magic-angle spinning (MAS) rate and, being nearly free from dipolar truncation effects, they enabled the detection of long-range, weak dipolar couplings, even in the presence of strong short-range dipolar couplings. This led to a connectivity information that was significantly better than that obtained with spontaneously proton-driven, <sup>15</sup>N spin-diffusion experiments. An indirect approach producing long-range <sup>15</sup>N–<sup>15</sup>N correlations was also tested, relying on short (ms-long) <sup>1</sup>H<sup>N</sup>–<sup>1</sup>H<sup>N</sup> mixings schemes while applying AL FRESCO chirped pulses along the <sup>15</sup>N channel. These indirect mixing schemes produced numerous long-distance N<sub>i</sub>–N<sub>i±n</sub> (n = 2 − 5) correlations, that might be useful for characterizing three-dimensional arrangements in proteins. Once again, these AL FRESCO mediated experiments proved more informative than variants based on spin-diffusion-based <sup>1</sup>H<sup>N</sup>–<sup>1</sup>H<sup>N</sup> counterparts.</p></div>","PeriodicalId":613,"journal":{"name":"Journal of Biomolecular NMR","volume":"78 1","pages":"19 - 30"},"PeriodicalIF":1.3000,"publicationDate":"2023-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Short and long range 2D 15N–15N NMR correlations among peptide groups by novel solid state dipolar mixing schemes\",\"authors\":\"Sungsool Wi, Conggang Li, Karen Pham, Woonghee Lee, Lucio Frydman\",\"doi\":\"10.1007/s10858-023-00429-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A recently developed homonuclear dipolar recoupling scheme, Adiabatic Linearly FREquency Swept reCOupling (AL FRESCO), was applied to record two-dimensional (2D) <sup>15</sup>N–<sup>15</sup>N correlations on uniformly <sup>15</sup>N-labeled GB1 powders. A major feature exploited in these <sup>15</sup>N–<sup>15</sup>N correlations was AL FRESCO’s remarkably low RF power demands, which enabled seconds-long mixing schemes when establishing direct correlations. These <sup>15</sup>N–<sup>15</sup>N mixing schemes proved efficient regardless of the magic-angle spinning (MAS) rate and, being nearly free from dipolar truncation effects, they enabled the detection of long-range, weak dipolar couplings, even in the presence of strong short-range dipolar couplings. This led to a connectivity information that was significantly better than that obtained with spontaneously proton-driven, <sup>15</sup>N spin-diffusion experiments. An indirect approach producing long-range <sup>15</sup>N–<sup>15</sup>N correlations was also tested, relying on short (ms-long) <sup>1</sup>H<sup>N</sup>–<sup>1</sup>H<sup>N</sup> mixings schemes while applying AL FRESCO chirped pulses along the <sup>15</sup>N channel. These indirect mixing schemes produced numerous long-distance N<sub>i</sub>–N<sub>i±n</sub> (n = 2 − 5) correlations, that might be useful for characterizing three-dimensional arrangements in proteins. Once again, these AL FRESCO mediated experiments proved more informative than variants based on spin-diffusion-based <sup>1</sup>H<sup>N</sup>–<sup>1</sup>H<sup>N</sup> counterparts.</p></div>\",\"PeriodicalId\":613,\"journal\":{\"name\":\"Journal of Biomolecular NMR\",\"volume\":\"78 1\",\"pages\":\"19 - 30\"},\"PeriodicalIF\":1.3000,\"publicationDate\":\"2023-12-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomolecular NMR\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10858-023-00429-0\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomolecular NMR","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10858-023-00429-0","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Short and long range 2D 15N–15N NMR correlations among peptide groups by novel solid state dipolar mixing schemes
A recently developed homonuclear dipolar recoupling scheme, Adiabatic Linearly FREquency Swept reCOupling (AL FRESCO), was applied to record two-dimensional (2D) 15N–15N correlations on uniformly 15N-labeled GB1 powders. A major feature exploited in these 15N–15N correlations was AL FRESCO’s remarkably low RF power demands, which enabled seconds-long mixing schemes when establishing direct correlations. These 15N–15N mixing schemes proved efficient regardless of the magic-angle spinning (MAS) rate and, being nearly free from dipolar truncation effects, they enabled the detection of long-range, weak dipolar couplings, even in the presence of strong short-range dipolar couplings. This led to a connectivity information that was significantly better than that obtained with spontaneously proton-driven, 15N spin-diffusion experiments. An indirect approach producing long-range 15N–15N correlations was also tested, relying on short (ms-long) 1HN–1HN mixings schemes while applying AL FRESCO chirped pulses along the 15N channel. These indirect mixing schemes produced numerous long-distance Ni–Ni±n (n = 2 − 5) correlations, that might be useful for characterizing three-dimensional arrangements in proteins. Once again, these AL FRESCO mediated experiments proved more informative than variants based on spin-diffusion-based 1HN–1HN counterparts.
期刊介绍:
The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include:
Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR.
New NMR techniques for studies of biological macromolecules.
Novel approaches to computer-aided automated analysis of multidimensional NMR spectra.
Computational methods for the structural interpretation of NMR data, including structure refinement.
Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals.
New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.