{"title":"水杨酸 1-单加氧酶的遗传和功能特性鉴定--该酶位于假单胞菌 AJR13 的整合和共轭元件 (ICE) 上","authors":"Igor Ivanovski, Gerben J. Zylstra","doi":"10.1007/s12275-023-00093-x","DOIUrl":null,"url":null,"abstract":"<p><i>Pseudomonas stutzeri</i> strain AJR13 was isolated for growth on the related compounds biphenyl (BPH) and diphenylmethane (DPM). The BPH and DPM degradative pathway genes are present on an integrative and conjugative element (ICE) in the chromosome. Examination of the genome sequence of AJR13 revealed a gene encoding a salicylate 1-monooxygenase (<i>salA</i>) associated with the ICE even though AJR13 did not grow on salicylate. Transfer of the ICE to the well-studied <i>Pseudomonas putida</i> KT2440 resulted in a KT2440 strain that could grow on salicylate. Knockout mutagenesis of the <i>salA</i> gene on the ICE in KT2440 eliminated the ability to grow on salicylate. Complementation of the knockout with the cloned <i>salA</i> gene restored growth on salicylate. Transfer of the cloned <i>salA</i> gene under control of the <i>lac</i> promoter to KT2440 resulted in a strain that could grow on salicylate. Heterologous expression of the <i>salA</i> gene in <i>E. coli</i> BL21 DE3 resulted in the production of catechol from salicylate, confirming that it is indeed a salicylate 1-monooxygenase. Interestingly, transfer of the cloned <i>salA</i> gene under control of the <i>lac</i> promoter to AJR13 resulted in a strain that could now grow on salicylate, suggesting that gene expression for the downstream catechol pathway is intact.</p>","PeriodicalId":16546,"journal":{"name":"Journal of Microbiology","volume":"82 1","pages":""},"PeriodicalIF":3.3000,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genetic and Functional Characterization of a Salicylate 1-monooxygenase Located on an Integrative and Conjugative Element (ICE) in Pseudomonas stutzeri AJR13\",\"authors\":\"Igor Ivanovski, Gerben J. Zylstra\",\"doi\":\"10.1007/s12275-023-00093-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><i>Pseudomonas stutzeri</i> strain AJR13 was isolated for growth on the related compounds biphenyl (BPH) and diphenylmethane (DPM). The BPH and DPM degradative pathway genes are present on an integrative and conjugative element (ICE) in the chromosome. Examination of the genome sequence of AJR13 revealed a gene encoding a salicylate 1-monooxygenase (<i>salA</i>) associated with the ICE even though AJR13 did not grow on salicylate. Transfer of the ICE to the well-studied <i>Pseudomonas putida</i> KT2440 resulted in a KT2440 strain that could grow on salicylate. Knockout mutagenesis of the <i>salA</i> gene on the ICE in KT2440 eliminated the ability to grow on salicylate. Complementation of the knockout with the cloned <i>salA</i> gene restored growth on salicylate. Transfer of the cloned <i>salA</i> gene under control of the <i>lac</i> promoter to KT2440 resulted in a strain that could grow on salicylate. Heterologous expression of the <i>salA</i> gene in <i>E. coli</i> BL21 DE3 resulted in the production of catechol from salicylate, confirming that it is indeed a salicylate 1-monooxygenase. Interestingly, transfer of the cloned <i>salA</i> gene under control of the <i>lac</i> promoter to AJR13 resulted in a strain that could now grow on salicylate, suggesting that gene expression for the downstream catechol pathway is intact.</p>\",\"PeriodicalId\":16546,\"journal\":{\"name\":\"Journal of Microbiology\",\"volume\":\"82 1\",\"pages\":\"\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2023-12-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s12275-023-00093-x\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s12275-023-00093-x","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
分离出了能在相关联苯(BPH)和二苯基甲烷(DPM)上生长的 stutzeri 假单胞菌菌株 AJR13。联苯(BPH)和二苯基甲烷(DPM)降解途径基因存在于染色体的整合和共轭元件(ICE)上。对 AJR13 基因组序列的研究发现,尽管 AJR13 不在水杨酸盐上生长,但其编码的水杨酸盐 1-单加氧酶(salA)基因与 ICE 有关。将 ICE 移植到经过充分研究的假单胞菌 KT2440 上,得到了能在水杨酸盐上生长的 KT2440 菌株。对 KT2440 中 ICE 上的 salA 基因进行基因敲除诱变,可消除其在水杨酸盐上生长的能力。用克隆的 salA 基因对敲除基因进行补码,可恢复在水杨酸盐上的生长。将克隆的 salA 基因在 lac 启动子的控制下转移到 KT2440 中,可使菌株在水杨酸盐上生长。在大肠杆菌 BL21 DE3 中异源表达 salA 基因,可从水杨酸中产生儿茶酚,这证实它确实是一种水杨酸 1-单加氧酶。有趣的是,将克隆的 salA 基因在 lac 启动子的控制下转入 AJR13 后,菌株现在可以在水杨酸盐上生长,这表明下游儿茶酚途径的基因表达是完整的。
Genetic and Functional Characterization of a Salicylate 1-monooxygenase Located on an Integrative and Conjugative Element (ICE) in Pseudomonas stutzeri AJR13
Pseudomonas stutzeri strain AJR13 was isolated for growth on the related compounds biphenyl (BPH) and diphenylmethane (DPM). The BPH and DPM degradative pathway genes are present on an integrative and conjugative element (ICE) in the chromosome. Examination of the genome sequence of AJR13 revealed a gene encoding a salicylate 1-monooxygenase (salA) associated with the ICE even though AJR13 did not grow on salicylate. Transfer of the ICE to the well-studied Pseudomonas putida KT2440 resulted in a KT2440 strain that could grow on salicylate. Knockout mutagenesis of the salA gene on the ICE in KT2440 eliminated the ability to grow on salicylate. Complementation of the knockout with the cloned salA gene restored growth on salicylate. Transfer of the cloned salA gene under control of the lac promoter to KT2440 resulted in a strain that could grow on salicylate. Heterologous expression of the salA gene in E. coli BL21 DE3 resulted in the production of catechol from salicylate, confirming that it is indeed a salicylate 1-monooxygenase. Interestingly, transfer of the cloned salA gene under control of the lac promoter to AJR13 resulted in a strain that could now grow on salicylate, suggesting that gene expression for the downstream catechol pathway is intact.
期刊介绍:
Publishes papers that deal with research on microorganisms, including archaea, bacteria, yeasts, fungi, microalgae, protozoa, and simple eukaryotic microorganisms. Topics considered for publication include Microbial Systematics, Evolutionary Microbiology, Microbial Ecology, Environmental Microbiology, Microbial Genetics, Genomics, Molecular Biology, Microbial Physiology, Biochemistry, Microbial Pathogenesis, Host-Microbe Interaction, Systems Microbiology, Synthetic Microbiology, Bioinformatics and Virology. Manuscripts dealing with simple identification of microorganism(s), cloning of a known gene and its expression in a microbial host, and clinical statistics will not be considered for publication by JM.