利用ISSR-DNA标记对具有商业价值的咖啡种间杂交种进行分子鉴定:对遗传改良的启示

IF 1.7 4区 生物学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Sreedevi Amruthakumar, Bhavatharani Manivel, Karthiga Sivamani, Thilaga Sethuraman, Nyani Surya Prakash Rao, Doss Ganesh
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引用次数: 0

摘要

利用ISSR标记对6个广泛种植的阿拉比卡咖啡(Coffea arabica L.)品种(选择5B、选择13、选择11、选择8、选择7.3和选择3)的遗传同一性进行了测试。利用所选咖啡品种的基因组DNA对15条ISSR引物进行了检测。每个ISSR引物平均扩增4个位点,扩增6个品种的基因组DNA。15条引物扩增的基因座大小范围在100 ~ 1200bp之间,不同引物扩增的基因座大小不同。根据扩增位点的数量和大小从低到高的范围,15个引物中只有3个引物被筛选,即ISSR4、ISSR6和ISSR8。选择性ISSR引物用独特的标记区分了6个咖啡品种。ISSR 4扩增出两个独特的标记,分别为Sln.5B的1300 bp和950 bp, Sln.13的180 bp和150 bp。ISSR6在Sln.5B、Sln.11和Sln.3中分别产生了5个位点大小为180 bp、1250 bp和350 bp的品种特异性标记。ISSR8在Sln.5B、Sln.11、Sln.7.3和Sln.3中分别扩增出7个700 bp和800 bp、200 bp和500 bp的独特位点,在Sln.7.3和Sln.3中分别扩增出300 bp和150 bp的独特位点。用选择性ISSR引物对6个咖啡品种的基因组DNA进行重复扩增,得到一致的ISSR遗传指纹图谱。用标记参数分辨力(RP)、有效多重倍率(EMR)、标记指数(MI)和多态信息含量(PIC)对选择性ISSR引物进行验证。讨论了这些标记在阿拉比卡咖啡遗传改良中的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Molecular identity for commercially important inter-specific hybrids of Coffea using ISSR-DNA marker: implication on genetic improvement

Molecular identity for commercially important inter-specific hybrids of Coffea using ISSR-DNA marker: implication on genetic improvement

Six popular and widely cultivated arabica coffee (Coffea arabica L.) varieties of commercial importance namely Selection 5B, Selection 13, Selection 11, Selection 8, Selection 7.3 and Selection 3 were tested for their genetic identity with ISSR markers. Fifteen ISSR primers were tested using genomic DNA of selected coffee varieties. Pooled genomic DNA of all the six varieties was amplified with each ISSR primer with an average of four loci per primer. The size range of locus amplified by all the fifteen primers was ranging from 100 to 1200 bp depending upon on the ISSR primers. Only three out of fifteen primers, namely ISSR4, ISSR6 and ISSR8, were screened based on the number of amplified locus and size range from low to high. The selective ISSR primers distinguished all the six varieties of coffee with unique markers. ISSR 4 amplified two unique markers with a locus size 1300 bp and 950 bp for Sln.5B and 180 bp and 150 bp for Sln.13. ISSR6 had produced five varietal-specific markers with a locus size of 180 bp in Sln.5B, 1250 bp in Sln.11, 350 bp in Sln.3. ISSR8 had amplified seven unique loci across the coffee varieties with 700 bp and 800 bp in Sln.5B, 200 bp and 500 bp in Sln.11 and one locus each in Sln.7.3 and Sln.3 with 300 bp and 150 bp respectively. Repeated amplification of genomic DNA of all the six varieties of coffee with selective ISSR primers produced consistent ISSR genetic fingerprints. Selective ISSR primers were validated with marker parameters resolving power (RP), effective multiplex ratio (EMR), marker index (MI) and polymorphic information content (PIC). Utilisation of these markers in arabica coffee genetic improvement is discussed.

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来源期刊
Plant Biotechnology Reports
Plant Biotechnology Reports 生物-生物工程与应用微生物
CiteScore
4.10
自引率
4.20%
发文量
72
审稿时长
>12 weeks
期刊介绍: Plant Biotechnology Reports publishes original, peer-reviewed articles dealing with all aspects of fundamental and applied research in the field of plant biotechnology, which includes molecular biology, genetics, biochemistry, cell and tissue culture, production of secondary metabolites, metabolic engineering, genomics, proteomics, and metabolomics. Plant Biotechnology Reports emphasizes studies on plants indigenous to the Asia-Pacific region and studies related to commercialization of plant biotechnology. Plant Biotechnology Reports does not exclude studies on lower plants including algae and cyanobacteria if studies are carried out within the aspects described above.
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