基于微观和宏观目标实验观测的经典三点刚性水模型多目标自动优化研究

IF 2.1 3区 工程技术 Q3 CHEMISTRY, MULTIDISCIPLINARY
Mattia Perrone, Riccardo Capelli, Charly Empereur-mot, Ali Hassanali and Giovanni M. Pavan*, 
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引用次数: 0

摘要

建立精确的水模型对分子模拟至关重要。尽管具有固有的近似性,三点刚性水模型仍然普遍用于模拟各种分子系统。自动优化方法最近被用于迭代地改进三点水模型,以拟合宏观(平均)热力学性质,提供最先进的三点模型,但仍然存在与液态水性质的一些偏差。在这里,我们展示了通过自动优化三点刚性水模型来拟合微观和宏观实验观测值的结果。我们使用Swarm-CG(一种多目标粒子群优化算法)来训练模型,以重现不同温度下液态水的实验径向分布函数(富含微观层面的信息,例如水分子的局部方向和相互作用)。我们系统地分析了这些模型与实验观测值的一致性,以及在训练集中加入宏观信息的效果。我们的研究结果表明,在水模型的训练中添加微观丰富的信息如何使人们以有效的方式达到最先进的精度。本文还讨论了该方法的局限性以及在这些三位点模型中对水的近似描述,为一般近似分子模型的优化提供了一个有用的示范案例。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Lessons Learned from Multiobjective Automatic Optimizations of Classical Three-Site Rigid Water Models Using Microscopic and Macroscopic Target Experimental Observables

Lessons Learned from Multiobjective Automatic Optimizations of Classical Three-Site Rigid Water Models Using Microscopic and Macroscopic Target Experimental Observables

Lessons Learned from Multiobjective Automatic Optimizations of Classical Three-Site Rigid Water Models Using Microscopic and Macroscopic Target Experimental Observables

The development of accurate water models is of primary importance for molecular simulations. Despite their intrinsic approximations, three-site rigid water models are still ubiquitously used to simulate a variety of molecular systems. Automatic optimization approaches have been recently used to iteratively refine three-site water models to fit macroscopic (average) thermodynamic properties, providing state-of-the-art three-site models that still present some deviations from the liquid water properties. Here, we show the results obtained by automatically optimizing three-site rigid water models to fit a combination of microscopic and macroscopic experimental observables. We use Swarm-CG, a multiobjective particle-swarm-optimization algorithm, for training the models to reproduce the experimental radial distribution functions of liquid water at various temperatures (rich in microscopic-level information on, e.g., the local orientation and interactions of the water molecules). We systematically analyze the agreement of these models with experimental observables and the effect of adding macroscopic information to the training set. Our results demonstrate how adding microscopic-rich information in the training of water models allows one to achieve state-of-the-art accuracy in an efficient way. Limitations in the approach and in the approximated description of water in these three-site models are also discussed, providing a demonstrative case useful for the optimization of approximated molecular models, in general.

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来源期刊
Journal of Chemical & Engineering Data
Journal of Chemical & Engineering Data 工程技术-工程:化工
CiteScore
5.20
自引率
19.20%
发文量
324
审稿时长
2.2 months
期刊介绍: The Journal of Chemical & Engineering Data is a monthly journal devoted to the publication of data obtained from both experiment and computation, which are viewed as complementary. It is the only American Chemical Society journal primarily concerned with articles containing data on the phase behavior and the physical, thermodynamic, and transport properties of well-defined materials, including complex mixtures of known compositions. While environmental and biological samples are of interest, their compositions must be known and reproducible. As a result, adsorption on natural product materials does not generally fit within the scope of Journal of Chemical & Engineering Data.
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