{"title":"CD-Surv:一个基于对比的动态生存分析模型。","authors":"Caogen Hong, Jinbiao Chen, Fan Yi, Yuzhe Hao, Fanwen Meng, Zhanghuiya Dong, Hui Lin, Zhengxing Huang","doi":"10.1007/s13755-022-00173-z","DOIUrl":null,"url":null,"abstract":"<p><p>Survival analysis, aimed at investigating the relationships between covariates and event time, has exhibited profound effects on health service management. Longitudinal data with sequential patterns, such as electronic health records (EHRs), contain a large volume of patient treatment trajectories, and therefore, provide great potential for survival analysis. However, most existing studies address the survival analysis problem in a static manner, that is, they only utilize a fraction of longitudinal data, ignore the correlations between multiple visits, and usually may not be able to capture the latent representations of patient treatment trajectories. This inevitably deteriorates the performance of the survival analysis. To address this challenge, we propose an end-to-end contrastive-based model <i>CD-Surv</i> to better understand the patient treatment trajectories and dynamically predict the survival probability of a target patient. Specifically, two data augmentation strategies, namely, <i>mask generation</i> and <i>shuffle generation</i>, are adopted to augment the real treatment trajectories documented in the EHR. Based on this, the hidden representations of the real trajectories can be improved by utilizing contrastive learning between augmented and real trajectories. We evaluated our proposed CD-Surv on two real-world datasets, and the experimental results indicated that our proposed model could outperform state-of-the-art baselines on various evaluation metrics.</p>","PeriodicalId":46312,"journal":{"name":"Health Information Science and Systems","volume":"10 1","pages":"5"},"PeriodicalIF":3.4000,"publicationDate":"2022-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9005562/pdf/","citationCount":"0","resultStr":"{\"title\":\"CD-Surv: a contrastive-based model for dynamic survival analysis.\",\"authors\":\"Caogen Hong, Jinbiao Chen, Fan Yi, Yuzhe Hao, Fanwen Meng, Zhanghuiya Dong, Hui Lin, Zhengxing Huang\",\"doi\":\"10.1007/s13755-022-00173-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Survival analysis, aimed at investigating the relationships between covariates and event time, has exhibited profound effects on health service management. Longitudinal data with sequential patterns, such as electronic health records (EHRs), contain a large volume of patient treatment trajectories, and therefore, provide great potential for survival analysis. However, most existing studies address the survival analysis problem in a static manner, that is, they only utilize a fraction of longitudinal data, ignore the correlations between multiple visits, and usually may not be able to capture the latent representations of patient treatment trajectories. This inevitably deteriorates the performance of the survival analysis. To address this challenge, we propose an end-to-end contrastive-based model <i>CD-Surv</i> to better understand the patient treatment trajectories and dynamically predict the survival probability of a target patient. Specifically, two data augmentation strategies, namely, <i>mask generation</i> and <i>shuffle generation</i>, are adopted to augment the real treatment trajectories documented in the EHR. Based on this, the hidden representations of the real trajectories can be improved by utilizing contrastive learning between augmented and real trajectories. We evaluated our proposed CD-Surv on two real-world datasets, and the experimental results indicated that our proposed model could outperform state-of-the-art baselines on various evaluation metrics.</p>\",\"PeriodicalId\":46312,\"journal\":{\"name\":\"Health Information Science and Systems\",\"volume\":\"10 1\",\"pages\":\"5\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2022-04-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9005562/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Health Information Science and Systems\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1007/s13755-022-00173-z\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/12/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"MEDICAL INFORMATICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Health Information Science and Systems","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1007/s13755-022-00173-z","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/12/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"MEDICAL INFORMATICS","Score":null,"Total":0}
CD-Surv: a contrastive-based model for dynamic survival analysis.
Survival analysis, aimed at investigating the relationships between covariates and event time, has exhibited profound effects on health service management. Longitudinal data with sequential patterns, such as electronic health records (EHRs), contain a large volume of patient treatment trajectories, and therefore, provide great potential for survival analysis. However, most existing studies address the survival analysis problem in a static manner, that is, they only utilize a fraction of longitudinal data, ignore the correlations between multiple visits, and usually may not be able to capture the latent representations of patient treatment trajectories. This inevitably deteriorates the performance of the survival analysis. To address this challenge, we propose an end-to-end contrastive-based model CD-Surv to better understand the patient treatment trajectories and dynamically predict the survival probability of a target patient. Specifically, two data augmentation strategies, namely, mask generation and shuffle generation, are adopted to augment the real treatment trajectories documented in the EHR. Based on this, the hidden representations of the real trajectories can be improved by utilizing contrastive learning between augmented and real trajectories. We evaluated our proposed CD-Surv on two real-world datasets, and the experimental results indicated that our proposed model could outperform state-of-the-art baselines on various evaluation metrics.
期刊介绍:
Health Information Science and Systems is a multidisciplinary journal that integrates artificial intelligence/computer science/information technology with health science and services, embracing information science research coupled with topics related to the modeling, design, development, integration and management of health information systems, smart health, artificial intelligence in medicine, and computer aided diagnosis, medical expert systems. The scope includes: i.) smart health, artificial Intelligence in medicine, computer aided diagnosis, medical image processing, medical expert systems ii.) medical big data, medical/health/biomedicine information resources such as patient medical records, devices and equipments, software and tools to capture, store, retrieve, process, analyze, optimize the use of information in the health domain, iii.) data management, data mining, and knowledge discovery, all of which play a key role in decision making, management of public health, examination of standards, privacy and security issues, iv.) development of new architectures and applications for health information systems.