中国眼镜蛇Naja atra的基因组组装与注释。

GigaByte (Hong Kong, China) Pub Date : 2023-11-20 eCollection Date: 2023-01-01 DOI:10.46471/gigabyte.99
Jiangang Wang, Yuxin Wu, Shiqing Wang, Weiwu Mu, Wenmei Zeng, Xi Chen, Kangfeng Jiang, Liangyu Yang, Guohai Hu, Fengping He
{"title":"中国眼镜蛇Naja atra的基因组组装与注释。","authors":"Jiangang Wang, Yuxin Wu, Shiqing Wang, Weiwu Mu, Wenmei Zeng, Xi Chen, Kangfeng Jiang, Liangyu Yang, Guohai Hu, Fengping He","doi":"10.46471/gigabyte.99","DOIUrl":null,"url":null,"abstract":"<p><p>In China, 65 types of venomous snakes exist, with the Chinese Cobra <i>Naja atra</i> being prominent and a major cause of snakebites in humans. Furthermore, <i>N. atra</i> is a protected animal in some areas, as it has been listed as vulnerable by the International Union for Conservation of Nature. Recently, due to the medical value of snake venoms, venomics has experienced growing research interest. In particular, genomic resources are crucial for understanding the molecular mechanisms of venom production. Here, we report a highly continuous genome assembly of <i>N. atra</i>, based on a snake sample from Huangshan, Anhui, China. The size of this genome is 1.67 Gb, while its repeat content constitutes 37.8% of the genome. A total of 26,432 functional genes were annotated. This data provides an essential resource for studying venom production in <i>N. atra</i>. It may also provide guidance for the protection of this species.</p>","PeriodicalId":73157,"journal":{"name":"GigaByte (Hong Kong, China)","volume":"2023 ","pages":"gigabyte99"},"PeriodicalIF":0.0000,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10682346/pdf/","citationCount":"0","resultStr":"{\"title\":\"The genome assembly and annotation of the Chinese cobra, <i>Naja atra</i>.\",\"authors\":\"Jiangang Wang, Yuxin Wu, Shiqing Wang, Weiwu Mu, Wenmei Zeng, Xi Chen, Kangfeng Jiang, Liangyu Yang, Guohai Hu, Fengping He\",\"doi\":\"10.46471/gigabyte.99\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In China, 65 types of venomous snakes exist, with the Chinese Cobra <i>Naja atra</i> being prominent and a major cause of snakebites in humans. Furthermore, <i>N. atra</i> is a protected animal in some areas, as it has been listed as vulnerable by the International Union for Conservation of Nature. Recently, due to the medical value of snake venoms, venomics has experienced growing research interest. In particular, genomic resources are crucial for understanding the molecular mechanisms of venom production. Here, we report a highly continuous genome assembly of <i>N. atra</i>, based on a snake sample from Huangshan, Anhui, China. The size of this genome is 1.67 Gb, while its repeat content constitutes 37.8% of the genome. A total of 26,432 functional genes were annotated. This data provides an essential resource for studying venom production in <i>N. atra</i>. It may also provide guidance for the protection of this species.</p>\",\"PeriodicalId\":73157,\"journal\":{\"name\":\"GigaByte (Hong Kong, China)\",\"volume\":\"2023 \",\"pages\":\"gigabyte99\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-11-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10682346/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"GigaByte (Hong Kong, China)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.46471/gigabyte.99\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"GigaByte (Hong Kong, China)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.46471/gigabyte.99","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

在中国,有65种毒蛇,其中中国眼镜蛇(Chinese Cobra Naja atra)最为突出,也是人类被蛇咬伤的主要原因。此外,atra在某些地区是受保护的动物,因为它已被国际自然保护联盟列为易危物种。近年来,由于蛇毒的医学价值,蛇毒组学受到越来越多的研究兴趣。特别是,基因组资源对于理解毒液产生的分子机制至关重要。在这里,我们报告了一个高度连续的N. atra基因组组装,基于来自中国安徽黄山的蛇样本。该基因组的大小为1.67 Gb,其重复序列含量占整个基因组的37.8%。共有26432个功能基因被注释。这一数据为研究北甲的毒液分泌提供了重要的资源。这也可能为该物种的保护提供指导。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The genome assembly and annotation of the Chinese cobra, Naja atra.

In China, 65 types of venomous snakes exist, with the Chinese Cobra Naja atra being prominent and a major cause of snakebites in humans. Furthermore, N. atra is a protected animal in some areas, as it has been listed as vulnerable by the International Union for Conservation of Nature. Recently, due to the medical value of snake venoms, venomics has experienced growing research interest. In particular, genomic resources are crucial for understanding the molecular mechanisms of venom production. Here, we report a highly continuous genome assembly of N. atra, based on a snake sample from Huangshan, Anhui, China. The size of this genome is 1.67 Gb, while its repeat content constitutes 37.8% of the genome. A total of 26,432 functional genes were annotated. This data provides an essential resource for studying venom production in N. atra. It may also provide guidance for the protection of this species.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
2.60
自引率
0.00%
发文量
0
审稿时长
5 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信