选择血液中的mRNA标记物用于生物染色供者的年龄估计。

IF 3.2 2区 医学 Q2 GENETICS & HEREDITY
Guro Dørum , Nadescha Viviane Hänggi , Dario Burri , Yael Marti , Regine Banemann , Galina Kulstein , Cornelius Courts , Annica Gosch , Thorsten Hadrys , Cordula Haas , Jacqueline Neubauer
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引用次数: 0

摘要

在过去的十年里,RNA在法医领域获得了大量的关注。有证据表明,rna的表达随生物年龄的变化而不同。由于RNA可以从同一证据中与DNA共同提取,基于RNA的分析似乎是一种很有前途的分子替代方法,可以预测生物年龄,从而推断一个人的实际年龄。利用RNA-Seq数据,我们在血液中寻找可能与年龄相关的标记物。我们使用了自己的来自干血渍的RNA-Seq数据以及来自全血的公开可用的RNA-Seq数据,并比较了两种不同的方法来选择候选标记物。第一种方法是利用DESeq2对单个基因进行分析,选择与年龄最相关的基因;第二种方法是利用套索回归(lasso regression)选择一组基因进行最优的年龄预测。我们提供了两个列表,其中包含270个候选标记,每种方法一个。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Selecting mRNA markers in blood for age estimation of the donor of a biological stain

RNA has gained a substantial amount of attention within the forensic field over the last decade. There is evidence that RNAs are differentially expressed with biological age. Since RNA can be co-extracted with DNA from the same piece of evidence, RNA-based analysis appears as a promising molecular alternative for predicting the biological age and hence inferring the chronological age of a person. Using RNA-Seq data we searched for markers in blood potentially associated with age. We used our own RNA-Seq data from dried blood stains as well as publicly available RNA-Seq data from whole blood, and compared two different approaches to select candidate markers. The first approach focused on individual gene analysis with DESeq2 to select the genes most correlated with age, while the second approach employed lasso regression to select a set of genes for optimal prediction of age. We present two lists with 270 candidate markers, one for each approach.

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来源期刊
CiteScore
7.50
自引率
32.30%
发文量
132
审稿时长
11.3 weeks
期刊介绍: Forensic Science International: Genetics is the premier journal in the field of Forensic Genetics. This branch of Forensic Science can be defined as the application of genetics to human and non-human material (in the sense of a science with the purpose of studying inherited characteristics for the analysis of inter- and intra-specific variations in populations) for the resolution of legal conflicts. The scope of the journal includes: Forensic applications of human polymorphism. Testing of paternity and other family relationships, immigration cases, typing of biological stains and tissues from criminal casework, identification of human remains by DNA testing methodologies. Description of human polymorphisms of forensic interest, with special interest in DNA polymorphisms. Autosomal DNA polymorphisms, mini- and microsatellites (or short tandem repeats, STRs), single nucleotide polymorphisms (SNPs), X and Y chromosome polymorphisms, mtDNA polymorphisms, and any other type of DNA variation with potential forensic applications. Non-human DNA polymorphisms for crime scene investigation. Population genetics of human polymorphisms of forensic interest. Population data, especially from DNA polymorphisms of interest for the solution of forensic problems. DNA typing methodologies and strategies. Biostatistical methods in forensic genetics. Evaluation of DNA evidence in forensic problems (such as paternity or immigration cases, criminal casework, identification), classical and new statistical approaches. Standards in forensic genetics. Recommendations of regulatory bodies concerning methods, markers, interpretation or strategies or proposals for procedural or technical standards. Quality control. Quality control and quality assurance strategies, proficiency testing for DNA typing methodologies. Criminal DNA databases. Technical, legal and statistical issues. General ethical and legal issues related to forensic genetics.
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