基于Q9BRX8蛋白的多种结构和功能注释的硅表征

Eiman Zahid, Muhammad Farhan Sarwar
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引用次数: 0

摘要

由于缺乏实验证据,人们对人体中发现的许多蛋白质知之甚少。假设的蛋白质(HPs)或未表征的蛋白质是用来描述这些蛋白质的术语。在这项工作中,使用计算机或生物信息学工具研究了其中一种蛋白质Q9BRX8,以揭示其重要特性。在这方面,结合NCBI的序列检索工具、ProtParam的理化性质分析工具、SOPMA的二级结构预测工具、SWISS-Model的同源性建模工具、STRING的蛋白-蛋白相互作用工具和HDOCK的蛋白-蛋白对接分析工具等。理化特性表明,不稳定性评分为32.57分的Q9BRX8是一种稳定蛋白。根据亚细胞定位研究,它在其他细胞区室中被发现,如细胞质、线粒体等,在那里它可能参与各种细胞功能。此外,其二级结构中α螺旋的比例较高(44.10%)。此外,通过蛋白-蛋白相互作用发现该蛋白属于FAM213A家族,提示其可能具有抗氧化剂和影响骨吸收等重要功能。而分子对接分析表明,Q9BRX8与HLA-G蛋白具有更大的相似性,评分为-332.53kcal/mol。可以假设Q9BRX8和HLA-G的功能可能由于这种相似性而相关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Multiple structural and functional annotations based in-silico characterization of Q9BRX8 protein
Numerous proteins found in humans are poorly understood because there is a dearth of experimental evidence. Hypothetical proteins (HPs) or uncharacterized proteins are the terms used to describe these proteins. In this work, one of these proteins, Q9BRX8, is investigated using in-silico or bioinformatics tools to reveal its significant properties. In this regard, NCBI for the sequence retrieval, ProtParam tool for analysis of physiochemical properties, SOPMA for secondary structure prediction, SWISS-Model for homology modelling, STRING for protein-protein interaction and HDOCK for protein-protein docking analysis among other tools, were incorporated. The physiochemical characteristics indicated that Q9BRX8, which has an instability score of 32.57, is a stable protein. It was identified in other cellular compartments, such as the cytosol, mitochondria, etc., where it may be betrothed in a variety of cellular functions, according to the sub-cellular localization studies. In addition, its secondary structure consists of high percentage of alpha helices (44.10%), among other components. Additionally, it was discovered through protein-protein interactions that this protein belongs to FAM213A family suggesting that it may function as antioxidant and affect bone resorption among other crucial functions. While, molecular docking analysis indicated that Q9BRX8 had a larger degree of similarity with the HLA-G protein, scoring -332.53kcal/mol. It can be hypothesized that the functions of Q9BRX8 and the HLA-G may be associated as a result of this similarity.
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来源期刊
Karbala International Journal of Modern Science
Karbala International Journal of Modern Science Multidisciplinary-Multidisciplinary
CiteScore
2.50
自引率
0.00%
发文量
54
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