用于未来移动 DNA 检测的 SoC 设计

IF 1.7 4区 计算机科学 Q3 COMPUTER SCIENCE, HARDWARE & ARCHITECTURE
Yunus Dawji;Zhongpan Wu;Abel Beyene;Karim Hammad;Ebrahim Ghafar-Zadeh;Sebastian Magierowski
{"title":"用于未来移动 DNA 检测的 SoC 设计","authors":"Yunus Dawji;Zhongpan Wu;Abel Beyene;Karim Hammad;Ebrahim Ghafar-Zadeh;Sebastian Magierowski","doi":"10.1109/LES.2023.3321587","DOIUrl":null,"url":null,"abstract":"Existing miniature DNA sequencing devices hold significant promise to serve as mobile/personal genomic analysis systems in the future. But a key challenge to this vision is the absence of adequate low-power bioinformatic computing ability within the sequencing device itself. In this letter, we discuss the design and demonstrate a system-on-chip (SoC) based on an accelerated RISC-V core for such a task. The chip was fabricated in 22-nm CMOS and executes almost \n<inline-formula> <tex-math>$10\\times $ </tex-math></inline-formula>\n faster than a commercial mobile processor on a DNA sequence detection task while achieving \n<inline-formula> <tex-math>$200\\times $ </tex-math></inline-formula>\n better energy efficiency.","PeriodicalId":56143,"journal":{"name":"IEEE Embedded Systems Letters","volume":"16 2","pages":"86-89"},"PeriodicalIF":1.7000,"publicationDate":"2023-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An SoC Design for Future Mobile DNA Detection\",\"authors\":\"Yunus Dawji;Zhongpan Wu;Abel Beyene;Karim Hammad;Ebrahim Ghafar-Zadeh;Sebastian Magierowski\",\"doi\":\"10.1109/LES.2023.3321587\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Existing miniature DNA sequencing devices hold significant promise to serve as mobile/personal genomic analysis systems in the future. But a key challenge to this vision is the absence of adequate low-power bioinformatic computing ability within the sequencing device itself. In this letter, we discuss the design and demonstrate a system-on-chip (SoC) based on an accelerated RISC-V core for such a task. The chip was fabricated in 22-nm CMOS and executes almost \\n<inline-formula> <tex-math>$10\\\\times $ </tex-math></inline-formula>\\n faster than a commercial mobile processor on a DNA sequence detection task while achieving \\n<inline-formula> <tex-math>$200\\\\times $ </tex-math></inline-formula>\\n better energy efficiency.\",\"PeriodicalId\":56143,\"journal\":{\"name\":\"IEEE Embedded Systems Letters\",\"volume\":\"16 2\",\"pages\":\"86-89\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2023-10-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"IEEE Embedded Systems Letters\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://ieeexplore.ieee.org/document/10268988/\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"COMPUTER SCIENCE, HARDWARE & ARCHITECTURE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"IEEE Embedded Systems Letters","FirstCategoryId":"94","ListUrlMain":"https://ieeexplore.ieee.org/document/10268988/","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"COMPUTER SCIENCE, HARDWARE & ARCHITECTURE","Score":null,"Total":0}
引用次数: 0

摘要

现有的微型 DNA 测序设备很有希望成为未来的移动/个人基因组分析系统。但实现这一愿景的关键挑战在于测序设备本身缺乏足够的低功耗生物信息计算能力。在这封信中,我们讨论并演示了基于加速 RISC-V 内核的片上系统 (SoC),以完成这样的任务。该芯片采用 22 纳米 CMOS 制造,在 DNA 序列检测任务上的执行速度比商用移动处理器快近 10 倍,同时能效比商用处理器高 200 倍。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An SoC Design for Future Mobile DNA Detection
Existing miniature DNA sequencing devices hold significant promise to serve as mobile/personal genomic analysis systems in the future. But a key challenge to this vision is the absence of adequate low-power bioinformatic computing ability within the sequencing device itself. In this letter, we discuss the design and demonstrate a system-on-chip (SoC) based on an accelerated RISC-V core for such a task. The chip was fabricated in 22-nm CMOS and executes almost $10\times $ faster than a commercial mobile processor on a DNA sequence detection task while achieving $200\times $ better energy efficiency.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
IEEE Embedded Systems Letters
IEEE Embedded Systems Letters Engineering-Control and Systems Engineering
CiteScore
3.30
自引率
0.00%
发文量
65
期刊介绍: The IEEE Embedded Systems Letters (ESL), provides a forum for rapid dissemination of latest technical advances in embedded systems and related areas in embedded software. The emphasis is on models, methods, and tools that ensure secure, correct, efficient and robust design of embedded systems and their applications.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信