新定义的n7 -甲基鸟苷修饰相关lncrna预测喉鳞癌预后

Pub Date : 2023-01-01 DOI:10.32604/biocell.2023.030796
ZHAOXU YAO, HAIBIN MA, LIN LIU, QIAN ZHAO, LONGCHAO QIN, XUEYAN REN, CHUANJUN WU, KAILI SUN
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引用次数: 0

摘要

目的:通过综合生物信息学分析,寻找新的特异性n7 -甲基鸟苷修饰相关长链非编码rna (m7G-lncRNAs),用于预测喉鳞状细胞癌(LSCC)的预后。方法:本研究的临床资料和LSCC基因表达数据最初从TCGA数据库中检索并消毒。然后,通过m7G相关mrna和lncrna的共表达分析以及LSCC和正常样本类别之间的差异表达分析(DEA),我们发现了与m7G相关的lncrna。采用单变量和多变量COX回归及LASSO回归分析,建立训练类别的预后预测模型,并对照检验类别数据检验模型的有效性。此外,我们对LSCC和正常样本类别中的预后m7g - lncrna进行了DEA分析,并编制了预后m7g - lncrna共表达网络和结构列表。为了比较预后预测模型中高风险和低风险类别LSCC个体的预后,还进行了生存和风险评估。最后,我们创建了一个nomogram来准确预测LSCC患者的预后,并创建了受试者工作特征(receiver operating characteristic, ROC)曲线来评估预后预测模型的预测能力。结果:通过共表达网络分析和差异表达分析,我们分别发现了774个m7g - lncrna和551个dem7g - lncrna。我们构建了6个m7g - lncrna (FLG−AS1、RHOA−IT1、AC020913.3、AC027307.2、AC010973.2和AC010789.1)的预后预测模型,鉴定出32个depm7g - lncrna,分析32个depm7g - lncrna与13个depm7g - mrna的相关性,并对预后预测模型进行生存分析和风险分析,评估LSCC患者的预后表现。通过显示ROC曲线和nomogram来检验预后预测模型的准确性。结论:通过建立新的预测lncRNA特征用于临床诊断和治疗,我们的研究结果将有助于了解LSCC的发病过程。
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Novel defined N7-methylguanosine modification-related lncRNAs for predicting the prognosis of laryngeal squamous cell carcinoma
Objective: Through integrated bioinformatics analysis, the goal of this work was to find new, characterised N7-methylguanosine modification-related long non-coding RNAs (m7G-lncRNAs) that might be used to predict the prognosis of laryngeal squamous cell carcinoma (LSCC). Methods: The clinical data and LSCC gene expression data for the current investigation were initially retrieved from the TCGA database & sanitised. Then, using co-expression analysis of m7G-associated mRNAs & lncRNAs & differential expression analysis (DEA) among LSCC & normal sample categories, we discovered lncRNAs that were connected to m7G. The prognosis prediction model was built for the training category using univariate & multivariate COX regression & LASSO regression analyses, & the model’s efficacy was checked against the test category data. In addition, we conducted DEA of prognostic m7G-lncRNAs among LSCC & normal sample categories & compiled a list of co-expression networks & the structure of prognosis m7G-lncRNAs. To compare the prognoses for individuals with LSCC in the high- & low-risk categories in the prognosis prediction model, survival and risk assessments were also carried out. Finally, we created a nomogram to accurately forecast the outcomes of LSCC patients & created receiver operating characteristic (ROC) curves to assess the prognosis prediction model’s predictive capability. Results: Using co-expression network analysis & differential expression analysis, we discovered 774 m7G-lncRNAs and 551 DEm7G-lncRNAs, respectively. We then constructed a prognosis prediction model for six m7G-lncRNAs (FLG−AS1, RHOA−IT1, AC020913.3, AC027307.2, AC010973.2 and AC010789.1), identified 32 DEPm7G-lncRNAs, analyzed the correlation between 32 DEPm7G-lncRNAs and 13 DEPm7G-mRNAs, and performed survival analyses and risk analyses of the prognosis prediction model to assess the prognostic performance of LSCC patients. By displaying ROC curves and a nomogram, we finally checked the prognosis prediction model's accuracy. Conclusion: By creating novel predictive lncRNA signatures for clinical diagnosis & therapy, our findings will contribute to understanding the pathogenetic process of LSCC.
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