生物和医学中稳健的海量并行信息处理环境:案例研究

J. Kroc
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摘要

在所有科学学科中观察到的高级物理和生物现象的描述和模拟的当前前沿都指向了发展具有错误弹性的鲁棒数学描述的重要性。复杂性研究缺乏对能够重建鲁棒性的过程设计方法的深入了解,这将在元胞自动机(CA)实现的大规模并行计算(MPCs)上进行研究。一个简单的双状态元胞自动机,具有极其简单的更新规则,由John H. Conway创建,称为“生命游戏”(GoL),用于使用紧急情况模拟和逻辑门。接下来是对一个健壮的、广义的GoL的模拟,它可以处理9个状态,而不是2个,这被称为R-GoL(开源)。额外的状态使细胞间的通信更高。逻辑门由GoL仿真实现。即使是最小概率的随机错误评估也会破坏它。R-GoL的模拟是随机启动的。对于R-GoL规则的不同设置,观察到几种对随机错误注入具有鲁棒性的紧急结构。GoL不是健壮的。R-GoL能够创建和维持振荡的、紧急的结构,这些结构在不断注入随机的、错误的评估(误差高达1%)下是稳健的。R-GoL表达远程同步,并通过设计细胞间通信实现鲁棒性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Robust massive parallel information processing environments in biology and medicine: case study
The current frontiers in the description and simulation of advanced physical and biological phenomena observed within all scientific disciplines are pointing toward the importance of the development of robust mathematical descriptions that are error resilient. Complexity research is lacking deeper knowledge of the design methodology of processes that are capable to recreate the robustness, which is going to be studied on massive-parallel computations (MPCs) implemented by cellular automata (CA). A simple, two-state cellular automaton having an extremely simple updating rule, which was created by John H. Conway called the ’Game of Life’ (GoL) is applied to simulate and logic gate using emergents. This is followed by simulations of a robust, generalized GoL, which works with nine states instead of two, that is called R-GoL (open-source). extra states enable higher intercellular communication. The logic gate is simulated by the GoL. It is destroyed by injection of random faulty evaluations with even the smallest probability. The simulations of the R-GoL are initiated with random values. several types of emergent structures, which are robust to injection of random errors, are observed for different setups of the R-GoL rule. The GoL is not robust. The R-GoL is capable to create and maintain oscillating, emergent structures that are robust under constant injection of random, faulty evaluations with up to 1% of errors. The R-GoL express long-range synchronization, which is together with robustness facilitated by designed intercellular communication.
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