通过数据流和控制流的结构化组合实现科学的工作流重用

S. Bowers, Bertram Ludäscher, A. Ngu, T. Critchlow
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引用次数: 82

摘要

以数据为中心的科学工作流通常被建模为数据流流程网络。数据流框架的简单性有助于工作流的设计、分析和优化。然而,使用数据流构造对“控制流密集型”任务进行建模通常会导致过于复杂的工作流,难以理解、重用和维护。我们基于科学的工作流模板和框架,描述了一个通用框架,用于在数据流过程网络中嵌入控制流密集型子任务。这种方法可以无缝地处理复杂的控制流,而不会牺牲数据流的优势。我们用来自天体物理学领域的真实世界的科学工作流程来说明我们的方法,需要在半可靠的环境中远程执行和文件传输。对于这样的工作流,我们还描述了一个基于框架和模板的三层架构,其中顶层由整体数据流处理网络组成,第二层由用于建模所需控制流行为的传感器模板组成,底层由模板内的框架组成,这些框架通过嵌入所需组件实现来实现专业化。我们的方法可以使科学工作流更健壮(容错策略可以由控制流驱动的传感器模板定义),同时更可重用,因为框架和模板的嵌入产生更结构化和模块化的工作流设计。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Enabling ScientificWorkflow Reuse through Structured Composition of Dataflow and Control-Flow
Data-centric scientific workflows are often modeled as dataflow process networks. The simplicity of the dataflow framework facilitates workflow design, analysis, and optimization. However, modeling "control-flow intensive" tasks using dataflow constructs often leads to overly complicated workflows that are hard to comprehend, reuse, and maintain. We describe a generic framework, based on scientific workflow templates and frames, for embedding control-flow intensive subtasks within dataflow process networks. This approach can seamlessly handle complex control-flow without sacrificing the benefits of dataflow. We illustrate our approach with a real-world scientific workflow from the astrophysics domain, requiring remote execution and file transfer in a semi-reliable environment. For such workflows, we also describe a 3-layered architecture based on frames and templates where the top-layer consists of an overall dataflow process network, the second layer consists of a tranducer template for modeling the desired control-flow behavior, and the bottom layer consists of frames inside the template that are specialized by embedding the desired component implementation. Our approach can enable scientific workflows that are more robust (faulttolerance strategies can be defined by control-flow driven transducer templates) and at the same time more reusable, since the embedding of frames and templates yields more structured and modular workflow designs.
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