{"title":"多层玻恩散射:多散射物体三维相位层析成像的有效模型(会议报告)","authors":"Michael Chen, Hsiou-Yuan Liu, D. Ren, L. Waller","doi":"10.1117/12.2509977","DOIUrl":null,"url":null,"abstract":"3D quantitative phase (refractive index) microscopy reveals volumetric structure of biological specimens. Optical diffraction tomography (ODT) is a common technique for 3D phase imaging. By angularly scanning a spatially coherent light source and measuring scattered fields on the imaging plane, 3D refractive index (RI) is recovered by solving an inverse problem. However, ODT often linearizes the process by using a weakly scattering model, e.g. the first Born approximation or Rytov approximation, which underestimate the RI and fail to reconstruct realistic shape of high RI contrast multiple scattering objects. On the other hand, non-linear models such as the multi-slice or beam propagation methods mitigate artifacts by modeling multiple scattering. However, they ignore back-scattering and intra-slice scattering and make a paraxial approximation by assuming each slice is infinitesimally thin. In this work, we propose a new 3D scattering model Multi-layer Born (MLB), which treats the object as thin 3D slabs with finite thickness and applies the first Born approximation on each slab as the field propagates through the object, increasing the accuracy significantly. In the meantime, a similar computation complexity is achieved comparing to the previously proposed multi-slice models. Therefore, MLB can achieve accuracy similar to that of FDTD or SEAGLE, a frequency domain solver, with orders of magnitude less computation time. In addition to forward scattering, multiple back-scattering effects are also captured by MLB unlike existing models. We apply MLB to recover the RI distribution of 3D phantoms and biological samples with intensity-only measurements from an LED array microscope and show that the results are superior to existing methods.","PeriodicalId":237104,"journal":{"name":"Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI","volume":"5 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2019-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Multi-layer Born scattering: an efficient model for 3D phase tomography with multiple scattering objects (Conference Presentation)\",\"authors\":\"Michael Chen, Hsiou-Yuan Liu, D. Ren, L. Waller\",\"doi\":\"10.1117/12.2509977\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"3D quantitative phase (refractive index) microscopy reveals volumetric structure of biological specimens. Optical diffraction tomography (ODT) is a common technique for 3D phase imaging. By angularly scanning a spatially coherent light source and measuring scattered fields on the imaging plane, 3D refractive index (RI) is recovered by solving an inverse problem. However, ODT often linearizes the process by using a weakly scattering model, e.g. the first Born approximation or Rytov approximation, which underestimate the RI and fail to reconstruct realistic shape of high RI contrast multiple scattering objects. On the other hand, non-linear models such as the multi-slice or beam propagation methods mitigate artifacts by modeling multiple scattering. However, they ignore back-scattering and intra-slice scattering and make a paraxial approximation by assuming each slice is infinitesimally thin. In this work, we propose a new 3D scattering model Multi-layer Born (MLB), which treats the object as thin 3D slabs with finite thickness and applies the first Born approximation on each slab as the field propagates through the object, increasing the accuracy significantly. In the meantime, a similar computation complexity is achieved comparing to the previously proposed multi-slice models. Therefore, MLB can achieve accuracy similar to that of FDTD or SEAGLE, a frequency domain solver, with orders of magnitude less computation time. In addition to forward scattering, multiple back-scattering effects are also captured by MLB unlike existing models. We apply MLB to recover the RI distribution of 3D phantoms and biological samples with intensity-only measurements from an LED array microscope and show that the results are superior to existing methods.\",\"PeriodicalId\":237104,\"journal\":{\"name\":\"Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI\",\"volume\":\"5 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2019-03-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1117/12.2509977\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1117/12.2509977","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
摘要
三维定量相位(折射率)显微镜揭示了生物标本的体积结构。光学衍射层析成像(ODT)是一种常用的三维相位成像技术。通过对空间相干光源进行角度扫描,测量成像平面上的散射场,通过求解逆问题恢复三维折射率(RI)。然而,ODT通常使用弱散射模型线性化过程,例如第一个Born近似或Rytov近似,这些模型低估了RI,并且无法重建高RI对比度多重散射物体的真实形状。另一方面,非线性模型,如多片或波束传播方法,通过模拟多重散射来减轻伪影。然而,他们忽略了后向散射和片内散射,并通过假设每个片都是无穷小薄来进行近轴近似。在这项工作中,我们提出了一种新的3D散射模型Multi-layer Born (MLB),该模型将物体视为有限厚度的薄3D板,并在场通过物体传播时对每个板应用第一个Born近似,从而显着提高了精度。同时,与之前提出的多切片模型相比,该模型的计算复杂度相近。因此,MLB可以达到与频域求解器FDTD或SEAGLE相似的精度,而计算时间要少几个数量级。除了前向散射外,MLB还捕获了与现有模型不同的多种后向散射效应。我们将MLB应用于LED阵列显微镜下仅强度测量的3D幻影和生物样品的RI分布,并表明结果优于现有方法。
Multi-layer Born scattering: an efficient model for 3D phase tomography with multiple scattering objects (Conference Presentation)
3D quantitative phase (refractive index) microscopy reveals volumetric structure of biological specimens. Optical diffraction tomography (ODT) is a common technique for 3D phase imaging. By angularly scanning a spatially coherent light source and measuring scattered fields on the imaging plane, 3D refractive index (RI) is recovered by solving an inverse problem. However, ODT often linearizes the process by using a weakly scattering model, e.g. the first Born approximation or Rytov approximation, which underestimate the RI and fail to reconstruct realistic shape of high RI contrast multiple scattering objects. On the other hand, non-linear models such as the multi-slice or beam propagation methods mitigate artifacts by modeling multiple scattering. However, they ignore back-scattering and intra-slice scattering and make a paraxial approximation by assuming each slice is infinitesimally thin. In this work, we propose a new 3D scattering model Multi-layer Born (MLB), which treats the object as thin 3D slabs with finite thickness and applies the first Born approximation on each slab as the field propagates through the object, increasing the accuracy significantly. In the meantime, a similar computation complexity is achieved comparing to the previously proposed multi-slice models. Therefore, MLB can achieve accuracy similar to that of FDTD or SEAGLE, a frequency domain solver, with orders of magnitude less computation time. In addition to forward scattering, multiple back-scattering effects are also captured by MLB unlike existing models. We apply MLB to recover the RI distribution of 3D phantoms and biological samples with intensity-only measurements from an LED array microscope and show that the results are superior to existing methods.