{"title":"在计算机上验证了摩尔多瓦共和国陆生脊椎动物物种的元条形码引物","authors":"Victor Sîtnic","doi":"10.52388/1857-064x.2022.3.08","DOIUrl":null,"url":null,"abstract":"In the present study, we aimed to design and perform in silico testing of new primers that could be used for metabarcoding research of terrestrial vertebrates species from the Republic of Moldova. Using bioinformatics techniques, were determined the taxonomic coverage, specificity and degree of conservation of new primers in comparison to universal primers used for vertebrate metabarcoding. The target group consisted of 174 terrestrial vertebrate species that are part of Moldova's fauna and whose mitogenomes are included in the global RefSeq database. In the frame of this group of species the new candidate primers demonstrated a superior performance.","PeriodicalId":430591,"journal":{"name":"Bulletin of the Academy of Sciences of Moldova Life Sciences","volume":"1 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"In Silico validated primers for metabarcoding terrestrial vertebrate species from the Republic of Moldova\",\"authors\":\"Victor Sîtnic\",\"doi\":\"10.52388/1857-064x.2022.3.08\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In the present study, we aimed to design and perform in silico testing of new primers that could be used for metabarcoding research of terrestrial vertebrates species from the Republic of Moldova. Using bioinformatics techniques, were determined the taxonomic coverage, specificity and degree of conservation of new primers in comparison to universal primers used for vertebrate metabarcoding. The target group consisted of 174 terrestrial vertebrate species that are part of Moldova's fauna and whose mitogenomes are included in the global RefSeq database. In the frame of this group of species the new candidate primers demonstrated a superior performance.\",\"PeriodicalId\":430591,\"journal\":{\"name\":\"Bulletin of the Academy of Sciences of Moldova Life Sciences\",\"volume\":\"1 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-03-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bulletin of the Academy of Sciences of Moldova Life Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.52388/1857-064x.2022.3.08\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bulletin of the Academy of Sciences of Moldova Life Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.52388/1857-064x.2022.3.08","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
In Silico validated primers for metabarcoding terrestrial vertebrate species from the Republic of Moldova
In the present study, we aimed to design and perform in silico testing of new primers that could be used for metabarcoding research of terrestrial vertebrates species from the Republic of Moldova. Using bioinformatics techniques, were determined the taxonomic coverage, specificity and degree of conservation of new primers in comparison to universal primers used for vertebrate metabarcoding. The target group consisted of 174 terrestrial vertebrate species that are part of Moldova's fauna and whose mitogenomes are included in the global RefSeq database. In the frame of this group of species the new candidate primers demonstrated a superior performance.