印度龟的分类等级:用DNA条形码的观点重新审视

DNA Barcodes Pub Date : 2013-05-06 DOI:10.2478/DNA-2013-0003
S. Kundu, K. C. Das, S. Ghosh
{"title":"印度龟的分类等级:用DNA条形码的观点重新审视","authors":"S. Kundu, K. C. Das, S. Ghosh","doi":"10.2478/DNA-2013-0003","DOIUrl":null,"url":null,"abstract":"Taxonomic rank of terrestrial tortoise inhabiting in India and adjacent countries has been an unresolved issue. Wild living species of Manouria and Indotestudo genera have been classiied through conventional taxonomy, but not adequately discriminated by mitochondrial cytochrome b gene. Cytochrome oxidase (COI) marker has been quite successful to achieve the exact species level information. There needs of an accurate sequence based effort for the extant northeast (NE) Indian tortoises to identify them accurately and to provide locality information. To estimate the Kimura-2-Parameter (K2P) divergences and to construct the NeighbourJoining (NJ) phylogeny, we generated six partial COI sequences derived from expert-identiied tortoise specimens. Both BLASTn and Bold-IDs revealed the deinitive identity of Manouria, whereas the congeners of Indotestudo remain inconclusive by only a two-fold interspeciic divergence gap with the other named Indian tortoise species. The NJ phylogeny readily differentiated the three Indian tortoise genera with their respective conspecies but depicted a nonsynonomous group of Indotestudo congeners. This study shows that the molecular identiication of Manouria emys phayrei, Indotestudo elongata and an allopatric population of Indotestudo forstenii in NE India corresponds correctly with existing morphological key support.","PeriodicalId":446240,"journal":{"name":"DNA Barcodes","volume":"14 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2013-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"17","resultStr":"{\"title\":\"Taxonomic rank of Indian tortoise:revisit with DNA barcoding perspective\",\"authors\":\"S. Kundu, K. C. Das, S. Ghosh\",\"doi\":\"10.2478/DNA-2013-0003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Taxonomic rank of terrestrial tortoise inhabiting in India and adjacent countries has been an unresolved issue. Wild living species of Manouria and Indotestudo genera have been classiied through conventional taxonomy, but not adequately discriminated by mitochondrial cytochrome b gene. Cytochrome oxidase (COI) marker has been quite successful to achieve the exact species level information. There needs of an accurate sequence based effort for the extant northeast (NE) Indian tortoises to identify them accurately and to provide locality information. To estimate the Kimura-2-Parameter (K2P) divergences and to construct the NeighbourJoining (NJ) phylogeny, we generated six partial COI sequences derived from expert-identiied tortoise specimens. Both BLASTn and Bold-IDs revealed the deinitive identity of Manouria, whereas the congeners of Indotestudo remain inconclusive by only a two-fold interspeciic divergence gap with the other named Indian tortoise species. The NJ phylogeny readily differentiated the three Indian tortoise genera with their respective conspecies but depicted a nonsynonomous group of Indotestudo congeners. This study shows that the molecular identiication of Manouria emys phayrei, Indotestudo elongata and an allopatric population of Indotestudo forstenii in NE India corresponds correctly with existing morphological key support.\",\"PeriodicalId\":446240,\"journal\":{\"name\":\"DNA Barcodes\",\"volume\":\"14 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2013-05-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"17\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"DNA Barcodes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2478/DNA-2013-0003\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"DNA Barcodes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2478/DNA-2013-0003","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 17

摘要

居住在印度和邻近国家的陆龟的分类等级一直是一个未解决的问题。Manouria属和Indotestudo属的野生活种已通过常规的分类方法进行了分类,但线粒体细胞色素b基因对其鉴别不够。细胞色素氧化酶(Cytochrome oxidase, COI)标记已经成功地获得了准确的物种水平信息。现存的东北(东北)印度陆龟需要一个精确的序列,以准确地识别它们并提供地方信息。为了估计Kimura-2-Parameter (K2P)辐散并构建邻域(NJ)系统发育,我们从专家鉴定的陆龟标本中生成了6个部分COI序列。BLASTn和Bold-IDs都揭示了Manouria的确切身份,而Indotestudo的同系物与其他已命名的印度陆龟物种仅存在2倍的种间差异,因此仍然没有定论。NJ系统发育很容易将三个印度龟属与它们各自的同种区分开来,但描绘了一个非同属的印度龟同属群。本研究表明,印度东北部Manouria emys phayrei、indotesudo elongata和indotesudo forstenii异域居群的分子鉴定与现有形态学关键支持相一致。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Taxonomic rank of Indian tortoise:revisit with DNA barcoding perspective
Taxonomic rank of terrestrial tortoise inhabiting in India and adjacent countries has been an unresolved issue. Wild living species of Manouria and Indotestudo genera have been classiied through conventional taxonomy, but not adequately discriminated by mitochondrial cytochrome b gene. Cytochrome oxidase (COI) marker has been quite successful to achieve the exact species level information. There needs of an accurate sequence based effort for the extant northeast (NE) Indian tortoises to identify them accurately and to provide locality information. To estimate the Kimura-2-Parameter (K2P) divergences and to construct the NeighbourJoining (NJ) phylogeny, we generated six partial COI sequences derived from expert-identiied tortoise specimens. Both BLASTn and Bold-IDs revealed the deinitive identity of Manouria, whereas the congeners of Indotestudo remain inconclusive by only a two-fold interspeciic divergence gap with the other named Indian tortoise species. The NJ phylogeny readily differentiated the three Indian tortoise genera with their respective conspecies but depicted a nonsynonomous group of Indotestudo congeners. This study shows that the molecular identiication of Manouria emys phayrei, Indotestudo elongata and an allopatric population of Indotestudo forstenii in NE India corresponds correctly with existing morphological key support.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信