基于新算法的光学标记人类基因组测序硬件加速

2018 IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT) Pub Date : 2018-03-01 DOI:10.1109/CONECCT.2018.8482395

K. Mulani, Harish Kumar, M. Gaurav, S. Sumam David

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引用次数: 0

摘要

最近，从光学标记的基因组中重建整个DNA序列已被探索。在本文中，我们提出了这种基因组组装的新算法的细节。我们阐明了多核CPU(1.98倍加速)和FPGA(7.022倍加速)实现的设计方法和结果，以加速计算。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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Hardware Acceleration of Optically Labeled Human Genome Sequencing using a Novel Algorithm

Recently, reconstruction of the entire DNA sequence from optically labeled genomes has been explored. In this paper, we present details of a novel algorithm for this genome assembly. We elucidate the design methodology and results for a multi-core CPU (1.98x speedup) and FPGA (7.022x speedup) implementation to accelerate the computations.

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2018 IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT)

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