基于深度学习的糖尿病知识图谱构建

Yonghe Lu, Ruijie Zhao, Shan Huang, Runjia Liu
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摘要

为了整合分散在互联网上的医疗数据,自然语言处理(NLP)被广泛应用于医学文本挖掘。BERT (Bidirectional Encoder Representations from Transformers)是众多表示模型中的佼佼者,基于BERT预训练语言模型的向量表示可以帮助目标任务学习到更多的语义信息。知识图直观地揭示了实体之间的关系,有助于探索实体之间更深层次的语义联系。知识图谱的构建包括实体抽取、关系抽取和图形生成三个重要部分。在此基础上,提出了一种基于bert的命名实体识别模型Bert-BiLSTM-CRF,并取得了较好的效果。在关系提取部分,使用BERT-Softmax对语义表达进行改进,其f1值比传统实体关系提取模型提高了12%。在此基础上重新定义了糖尿病的实体及其关系,丰富了知识图谱的语义。最后利用Neo4j图形数据库实现糖尿病知识图谱的可视化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Construction of Diabetes Knowledge Graph Based on Deep Learning
To integrate medical data which is scattered over the internet, natural language processing (NLP) is widely used in medical text mining. BERT (Bidirectional Encoder Representations from Transformers) is outstanding among many other representation models and vector representation based on Bert pre-training language model can help the target task learn more semantic information. The knowledge graph intuitively reveals the relationship between entities and helps explore deeper semantic connections between entities. There are three important parts in the construction of a knowledge graph, including entity extraction, relation extraction, and graph generation. Based on these methods this paper proposes a Bert-based named entities identification model Bert-BiLSTM-CRF and it is outperforming the established methods. In the relation extraction part, use the BERT-Softmax to improve the semantic expression and its F1-value increased by 12 percent compared with the traditional entity relation extraction model. Based on the above redefined the entities of diabetes and their relationships to enrich the semantics of the knowledge graph. Finally, the Neo4j graph database was used to realize the visualization of the diabetes knowledge map.
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