在DMFB中使用随机样品集的合成感知样品制备技术

P. Roy, S. Chakraborty, H. Rahaman
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引用次数: 0

摘要

近年来,数字微流控生物芯片已成为微滴微流控操作的主要可行替代平台。这些设备在涉及医疗诊断、生化分析和环境毒性监测问题的领域得到应用。形成用于样品制备的序列图,然后进行结构级合成,是dmfb设计自动化的初始主要步骤。在本文中,我们提出了一种技术,样品制备使用的基础溶液,为一个给定的随机样本集。该技术被开发为合成感知,以便能够有效地利用流水线合成模块方面的资源。所提出的方法的优点是i)在模块和样品数量方面的最佳资源利用和ii)有效地提高了生物测定的总体执行时间。对给定的一组随机样本和给定的一组高斯分布样本进行了仿真。结果显示在i)样品利用率的数量,ii)混合分离操作的数量,iii)废物液滴数量的形成和iv)用于执行整个生物测定的实际模块数量方面有令人鼓舞的改进。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Synthesis aware sample preparation techniques using random sample sets in DMFB
Digital Microfluidic Biochips in recent years have emerged as a major feasible alternative platform for droplet based microfluidic operations within a miniaturized substrate. These devices find applications in the areas involving medical diagnostics, biochemical analysis and environmental toxicity monitoring issues. Formation of the sequencing graph for sample preparation followed by architecture level synthesis is the initial primary procedure for design automation of DMFBs. In this paper we proposed a technique for sample preparation using base solutions for a given random set of samples. The technique is developed to be synthesis aware in order to enable efficient use of resources in terms of modules for pipelined synthesis. The advantages of the proposed method is i) optimal resource utilization in terms of number of modules and samples and ii) efficient enhancement in overall execution time for the bioassay. The simulation is carried out with a given set of random samples as well as with a specified set of samples with Gaussian distribution. The results show encouraging improvements in i) number of sample utilizations, ii)number of mix-split operations iii)the formation of the number of waste droplets and iv) the actual number of modules used for execution of the overall bioassay.
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