A machine vision system for the automated classification and counting of neurons in 3-D brain tissue samples

Neuron count in various brain structures is an important factor in many neurobiological studies. We describe a machine vision system which uses color images for the automated classification and counting of neurons in tissue samples. Samples are sliced into registered sections whose thickness is on the order of the diameter of a neuronal nucleus. Sections are stained so that the spectral transmission functions of the neuronal nuclei differ from the surrounding tissue. Each section is imaged using a light microscope. A Bayesian classifier is used for pixel labeling and a geometric analysis routine is employed to segment neuron regions in each section. The 3D tissue sample is reconstructed using registered neuron regions from each section. An object oriented database management system provides an experimental framework for cataloging neuron classes. Experimental results are presented and compared with results obtained by a histologist.