整合科学工作流程与科学网关:巴西国家高性能计算网络中的生物信息学实验

Maria Luiza Mondelli, Marcelo Galheigo, V´ıvian Medeiros, Bruno F. Bastos, A. A. Gomes, M. Mattoso, A. T. Vasconcelos, Luiz M. R. Gadelha
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引用次数: 0

摘要

由于测序技术的改进,生物信息学实验正在迅速而不断地发展。这些实验通常需要高性能的计算,产生大量的数据。它们还要求以特定顺序执行不同的程序,从而允许将实验建模为工作流。然而,用户并不总是拥有执行这些实验所需的基础设施。我们的贡献是集成科学工作流管理系统和支持网格的科学网关,为用户提供在地理分布的计算资源中运行这些工作流的透明方式。通过网关的工作流的可用性允许这些实验的更好的可用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrating Scientific Workflows with Scientific Gateways: A Bioinformatics Experiment in the Brazilian National High-Performance Computing Network
Bioinformatics experiments are rapidly and constantly evolving due improvements in sequencing technologies. These experiments usually demand high performance computation and produce huge quantities of data. They also require different programs to be executed in a certain order, allowing the experiments to be modeled as workflows. However, users do not always have the infrastructure needed to perform these experiments. Our contribution is the integration of scientific workflow management systems and grid-enabled scientific gateways, providing the user with a transparent way to run these workflows in geographically distributed computing resources. The availability of the workflow through the gateway allows for a better usability of these experiments.
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