长时间尺度下分子光动力学的模拟

S. Mukherjee, Max Pinheiro, Baptiste Demoulin, M. Barbatti
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引用次数: 11

摘要

长时间尺度(远超过10ps)的非绝热动力学模拟是计算光化学的下一个挑战。这篇论文划定了我们期望运行这种模拟的方法的范围:它们应该在全核维度上工作,足够通用以处理任何类型的分子,并且不需要不切实际的计算资源。我们研究了我们应该冒险推进该领域的主要方法挑战,包括电子结构计算的计算成本,积分方法的稳定性,非绝热动力学算法的准确性和软件优化。基于旨在阐明这些问题的模拟,我们展示了机器学习如何成为长时间尺度动力学的关键因素,无论是作为电子结构计算的替代品,还是帮助模型哈密顿量的参数化。我们表明,传统的经典方程积分方法应该足以扩展到1ns的模拟,并且表面跳变在弱耦合状态下与波包传播半定量地一致。我们还描述了我们对Newton-X程序的优化,以减少数据处理和存储的计算开销。这篇文章是主题问题“没有波恩-奥本海默近似的化学”的一部分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Simulations of molecular photodynamics in long timescales
Nonadiabatic dynamics simulations in the long timescale (much longer than 10 ps) are the next challenge in computational photochemistry. This paper delimits the scope of what we expect from methods to run such simulations: they should work in full nuclear dimensionality, be general enough to tackle any type of molecule and not require unrealistic computational resources. We examine the main methodological challenges we should venture to advance the field, including the computational costs of the electronic structure calculations, stability of the integration methods, accuracy of the nonadiabatic dynamics algorithms and software optimization. Based on simulations designed to shed light on each of these issues, we show how machine learning may be a crucial element for long time-scale dynamics, either as a surrogate for electronic structure calculations or aiding the parameterization of model Hamiltonians. We show that conventional methods for integrating classical equations should be adequate to extended simulations up to 1 ns and that surface hopping agrees semiquantitatively with wave packet propagation in the weak-coupling regime. We also describe our optimization of the Newton-X program to reduce computational overheads in data processing and storage. This article is part of the theme issue ‘Chemistry without the Born–Oppenheimer approximation’.
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