硬件加速DNA测序

2018 IEEE 61st International Midwest Symposium on Circuits and Systems (MWSCAS) Pub Date : 2018-08-01 DOI:10.1109/MWSCAS.2018.8623915

Zhongpan Wu, Karim Hammad, Yunus Dawji, E. Ghafar-Zadeh, S. Magierowski

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引用次数: 0

摘要

碱基提取是DNA测序的核心功能。它负责将测量的日期转换为DNA分子组成的文本表示。测序仪器的最新进展大大加快了利用小型化平台收集DNA数据的速度。为了跟上，基调用函数需要大量的计算能力。为了减轻这个负担，我们演示了一个基于fpga的硬件加速器用于基调用。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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Hardware Accelerated DNA Sequencing

Basecalling is a core function in DNA sequencing. It is responsible for the conversion of measured date to a text representation of the DNA’s molecular make-up. Recent advances in sequencing machinery have greatly accelerated the rate at which DNA data can be gathered using miniaturized platforms. To keep up, the basecalling function requires sub-stantial computing power. To ease this burden we demonstrate an FPGA-based hardware accelerator for basecalling.

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来源期刊

2018 IEEE 61st International Midwest Symposium on Circuits and Systems (MWSCAS)

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