{"title":"果蝇胚胎图像中基因表达区的定位","authors":"Qi Li, Wagner Silveira, Y. Gong","doi":"10.1109/ChinaSIP.2014.6889300","DOIUrl":null,"url":null,"abstract":"Automatic localization of gene expression regions in Drosophila embryonic images is an important step in a computational system for the discovery of patterns of gene-gene interaction. In this paper, we propose a thresholding framework that selects an optimal threshold via a consistency criterion on good candidate thresholds provided by multiple response functions, including intensity histograms. In experiments, we test the proposed framework, being compared with four well-known methods, on images in Berkley Drosophila Genome Project (BDGP) dataset, and obtain promising results.","PeriodicalId":248977,"journal":{"name":"2014 IEEE China Summit & International Conference on Signal and Information Processing (ChinaSIP)","volume":"129 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2014-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Localization of gene expression regions in Drosophila embryonic images\",\"authors\":\"Qi Li, Wagner Silveira, Y. Gong\",\"doi\":\"10.1109/ChinaSIP.2014.6889300\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Automatic localization of gene expression regions in Drosophila embryonic images is an important step in a computational system for the discovery of patterns of gene-gene interaction. In this paper, we propose a thresholding framework that selects an optimal threshold via a consistency criterion on good candidate thresholds provided by multiple response functions, including intensity histograms. In experiments, we test the proposed framework, being compared with four well-known methods, on images in Berkley Drosophila Genome Project (BDGP) dataset, and obtain promising results.\",\"PeriodicalId\":248977,\"journal\":{\"name\":\"2014 IEEE China Summit & International Conference on Signal and Information Processing (ChinaSIP)\",\"volume\":\"129 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2014-07-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2014 IEEE China Summit & International Conference on Signal and Information Processing (ChinaSIP)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ChinaSIP.2014.6889300\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2014 IEEE China Summit & International Conference on Signal and Information Processing (ChinaSIP)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ChinaSIP.2014.6889300","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Localization of gene expression regions in Drosophila embryonic images
Automatic localization of gene expression regions in Drosophila embryonic images is an important step in a computational system for the discovery of patterns of gene-gene interaction. In this paper, we propose a thresholding framework that selects an optimal threshold via a consistency criterion on good candidate thresholds provided by multiple response functions, including intensity histograms. In experiments, we test the proposed framework, being compared with four well-known methods, on images in Berkley Drosophila Genome Project (BDGP) dataset, and obtain promising results.