使用Hadoop进行生物交互的分布式处理

2015 6th IEEE International Conference on Cognitive Infocommunications (CogInfoCom) Pub Date : 2015-10-01 DOI:10.1109/COGINFOCOM.2015.7390586

B. Antal, B. Auer

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引用次数: 0

摘要

在本文中，我们提出了一个软件来支持功能基因组学社区的实验设计，允许他们处理大规模的基因或蛋白质相互作用。该软件使用Python编写，并使用Apache Hadoop作为分布式环境。我们展示了软件是如何实现的，以及它是如何随着数据量的指数增长而扩展的。该软件是开源的，可以在https://github.com/benauer/Biogrid-Hadoop上免费获得。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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Distributed processing of biological interactions using Hadoop

In this paper, we propose a software to support the functional genomics community in experiment design by allowing them the processing of large-scale gene or protein interactions. The software is written in Python and uses Apache Hadoop as a distributed environment. We show how the software was implemented as well as how it scales with exponentially growing amount of data. The software is open source and is freely available at https://github.com/benauer/Biogrid-Hadoop.

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2015 6th IEEE International Conference on Cognitive Infocommunications (CogInfoCom)

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