{"title":"在生化回路中,绝缘基序抑制反作用并不需要高的燃料消耗率","authors":"Abhishek Deshpande, Thomas E. Ouldridge","doi":"10.1049/enb.2017.0017","DOIUrl":null,"url":null,"abstract":"<div>\n <p>Retroactivity arises when the coupling of a molecular network to a downstream network results in signal propagation back from to . The phenomenon represents a breakdown in modularity of biochemical circuits and hampers the rational design of complex functional networks. Considering simple models of signal-transduction architectures, the authors demonstrate the strong dependence of retroactivity on the properties of the upstream system, and explore the cost and efficacy of fuel-consuming insulating motifs that can mitigate retroactive effects. They find that simple insulating motifs can suppress retroactivity at a low fuel cost by coupling only weakly to the upstream system . However, this design approach reduces the signalling network's robustness to perturbations from leak reactions, and potentially compromises its ability to respond to rapidly varying signals.</p>\n </div>","PeriodicalId":72921,"journal":{"name":"Engineering biology","volume":"1 2","pages":"86-99"},"PeriodicalIF":0.0000,"publicationDate":"2017-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1049/enb.2017.0017","citationCount":"6","resultStr":"{\"title\":\"High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits\",\"authors\":\"Abhishek Deshpande, Thomas E. Ouldridge\",\"doi\":\"10.1049/enb.2017.0017\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n <p>Retroactivity arises when the coupling of a molecular network to a downstream network results in signal propagation back from to . The phenomenon represents a breakdown in modularity of biochemical circuits and hampers the rational design of complex functional networks. Considering simple models of signal-transduction architectures, the authors demonstrate the strong dependence of retroactivity on the properties of the upstream system, and explore the cost and efficacy of fuel-consuming insulating motifs that can mitigate retroactive effects. They find that simple insulating motifs can suppress retroactivity at a low fuel cost by coupling only weakly to the upstream system . However, this design approach reduces the signalling network's robustness to perturbations from leak reactions, and potentially compromises its ability to respond to rapidly varying signals.</p>\\n </div>\",\"PeriodicalId\":72921,\"journal\":{\"name\":\"Engineering biology\",\"volume\":\"1 2\",\"pages\":\"86-99\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-12-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1049/enb.2017.0017\",\"citationCount\":\"6\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Engineering biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1049/enb.2017.0017\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Engineering biology","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1049/enb.2017.0017","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
High rates of fuel consumption are not required by insulating motifs to suppress retroactivity in biochemical circuits
Retroactivity arises when the coupling of a molecular network to a downstream network results in signal propagation back from to . The phenomenon represents a breakdown in modularity of biochemical circuits and hampers the rational design of complex functional networks. Considering simple models of signal-transduction architectures, the authors demonstrate the strong dependence of retroactivity on the properties of the upstream system, and explore the cost and efficacy of fuel-consuming insulating motifs that can mitigate retroactive effects. They find that simple insulating motifs can suppress retroactivity at a low fuel cost by coupling only weakly to the upstream system . However, this design approach reduces the signalling network's robustness to perturbations from leak reactions, and potentially compromises its ability to respond to rapidly varying signals.