斑马鱼有丝分裂新基因组的序列、结构和系统发育分析。

IF 1.7 4区 生物学 Q4 CELL BIOLOGY
Qingmiao Yuan, Jianbin Sha, Yubao Duan
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引用次数: 0

摘要

白腹鸟(Erpornis zantholeuca)是飞禽目的一种鸟类,但其分类地位仍有争议。为了了解棘豆的系统发育位置和该家族的系统发育关系,我们对棘豆线粒体全基因组进行了测序,全长16902 bp,包含13个蛋白质编码基因(PCGs)、22个转移RNA (tRNA)基因、2个核糖体RNA (rRNA)基因和一个控制区。全基因组核苷酸组成分别为A 30.10%、C 30.48%、G 15.14%和T 24.28%, AT含量升高(54.38%)。除8个trnA (trnQ、trnA、trnN、trnC、trnY、trnS2(UCN)、trnP、trnE)和1个PCG (Mt-ND6)外,所有基因均编码在h链上。大多数PCGs使用标准的ATN作为起始密码子,TAN作为终止密码子。预测所有trna都形成典型的三叶草二级结构。该基因序列与Gallus Gallus基因序列一致,属于半胚型或典型的鸟类基因序列。基于贝叶斯推理和极大似然方法的系统发育关系表明,E. zantholeuca是(Vireo altiloquus + Vireo olivaceus)的姊妹类群。此外,黑斑蝶属与其他属有亲缘关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The New Mitogenome of Erpornis zantholeuca (Aves: Passeriformes): Sequence, Structure, and Phylogenetic Analyses.

White-bellied Erpornis (Erpornis zantholeuca) is a group of birds in the order Passeriformes, but its taxonomic status remains controversial. To understand the phylogenetic position of E. zantholeuca and phylogenetic relations within this family, we sequenced the complete mitochondrial genome of E. zantholeuca, which was 16,902 bp in length, containing 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region. The nucleotide composition of the whole genome was 30.10% A, 30.48% C, 15.14% G, and 24.28% T and showed an elevated AT content (54.38%). All genes were encoded on the H-strand, with the exceptions of 8 tRNAs (trnQ, trnA, trnN, trnC, trnY, trnS2(UCN), trnP, trnE) and 1 PCG (Mt-ND6). Most PCGs used standard ATN as start codons, and TAN as stop codons. All tRNAs were predicted to form the typical cloverleaf secondary structures. The gene order of E. zantholeuca was consistent with that of Gallus gallus, which was considered to be a plesiomorphic or typical avian gene order. Phylogenetic relationships based on bayesian inference and maximum likelihood methods showed that E. zantholeuca was well supported as the sister group of (Vireo altiloquus + Vireo olivaceus). In addition, Pteruthius melanotis was sister to the other members of Vireonidae.

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来源期刊
Cytogenetic and Genome Research
Cytogenetic and Genome Research 生物-细胞生物学
CiteScore
3.10
自引率
5.90%
发文量
25
审稿时长
1 months
期刊介绍: During the last decades, ''Cytogenetic and Genome Research'' has been the leading forum for original reports and reviews in human and animal cytogenetics, including molecular, clinical and comparative cytogenetics. In recent years, most of its papers have centered on genome research, including gene cloning and sequencing, gene mapping, gene regulation and expression, cancer genetics, comparative genetics, gene linkage and related areas. The journal also publishes key papers on chromosome aberrations in somatic, meiotic and malignant cells. Its scope has expanded to include studies on invertebrate and plant cytogenetics and genomics. Also featured are the vast majority of the reports of the International Workshops on Human Chromosome Mapping, the reports of international human and animal chromosome nomenclature committees, and proceedings of the American and European cytogenetic conferences and other events. In addition to regular issues, the journal has been publishing since 2002 a series of topical issues on a broad variety of themes from cytogenetic and genome research.
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