{"title":"俄罗斯雅罗斯拉夫尔地区1961年Chironomusmelanotus Keyl的Karyotype和COI基因序列及其GenBank和BOLD系统鉴定的困难","authors":"Viktor V Bolshakov, Ekaterina A Movergoz","doi":"10.3897/compcytogen.v16.i3.90336","DOIUrl":null,"url":null,"abstract":"<p><p>Karyotype and <i>COI</i> gene sequences of <i>Chironomusmelanotus</i> Keyl, 1961 from the Yaroslavl region (Russia) were analyzed. A low level of chromosomal polymorphism has been confirmed, eventually eight banding sequences were found: melA1, melB1, melC1, melD1, melE1, melF1, and melG1; only melD2 was found in two larvae from the Sunoga river. Analysis of phylogenetic tree and estimated genetic distances has shown not all <i>COI</i> gene sequences of <i>Ch.melanotus</i> in GenBank and BOLD to belong to this species. The lower distance of 0.4% was observed between two sequences from the Yaroslavl region and Finland, apparently these are true <i>Ch.melanotus</i> sequences. The distances between true <i>Ch.melanotus</i> and other sequences from Finland were 9.5% and 12.4%, and from Sweden it was 11%. The average genetic distance between studied sequences of 9.1% is out of the range of the 3% threshold previously determined for chironomids. According to our estimates, there are two sequences with a distance of 2.9% that may belong to <i>Ch.annularius</i> Meigen, 1818, and one sequence with a genetic distance of 2.1%, may belonging to <i>Ch.cingulatus</i> Meigen, 1830, which has been confirmed karyologically. Another two sequences form a separate cluster. We suggest that they either belong to a known species, but are not present in the databases, or belong to a distinct, undescribed species.</p>","PeriodicalId":50656,"journal":{"name":"Comparative Cytogenetics","volume":"16 3","pages":"161-172"},"PeriodicalIF":1.0000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849057/pdf/","citationCount":"3","resultStr":"{\"title\":\"Karyotype and COI gene sequences of <i>Chironomusmelanotus</i> Keyl, 1961 from the Yaroslavl region, Russia, and the difficulties with its identification using GenBank and BOLD systems.\",\"authors\":\"Viktor V Bolshakov, Ekaterina A Movergoz\",\"doi\":\"10.3897/compcytogen.v16.i3.90336\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Karyotype and <i>COI</i> gene sequences of <i>Chironomusmelanotus</i> Keyl, 1961 from the Yaroslavl region (Russia) were analyzed. A low level of chromosomal polymorphism has been confirmed, eventually eight banding sequences were found: melA1, melB1, melC1, melD1, melE1, melF1, and melG1; only melD2 was found in two larvae from the Sunoga river. Analysis of phylogenetic tree and estimated genetic distances has shown not all <i>COI</i> gene sequences of <i>Ch.melanotus</i> in GenBank and BOLD to belong to this species. The lower distance of 0.4% was observed between two sequences from the Yaroslavl region and Finland, apparently these are true <i>Ch.melanotus</i> sequences. The distances between true <i>Ch.melanotus</i> and other sequences from Finland were 9.5% and 12.4%, and from Sweden it was 11%. The average genetic distance between studied sequences of 9.1% is out of the range of the 3% threshold previously determined for chironomids. According to our estimates, there are two sequences with a distance of 2.9% that may belong to <i>Ch.annularius</i> Meigen, 1818, and one sequence with a genetic distance of 2.1%, may belonging to <i>Ch.cingulatus</i> Meigen, 1830, which has been confirmed karyologically. Another two sequences form a separate cluster. We suggest that they either belong to a known species, but are not present in the databases, or belong to a distinct, undescribed species.</p>\",\"PeriodicalId\":50656,\"journal\":{\"name\":\"Comparative Cytogenetics\",\"volume\":\"16 3\",\"pages\":\"161-172\"},\"PeriodicalIF\":1.0000,\"publicationDate\":\"2022-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9849057/pdf/\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Comparative Cytogenetics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3897/compcytogen.v16.i3.90336\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Comparative Cytogenetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3897/compcytogen.v16.i3.90336","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Karyotype and COI gene sequences of Chironomusmelanotus Keyl, 1961 from the Yaroslavl region, Russia, and the difficulties with its identification using GenBank and BOLD systems.
Karyotype and COI gene sequences of Chironomusmelanotus Keyl, 1961 from the Yaroslavl region (Russia) were analyzed. A low level of chromosomal polymorphism has been confirmed, eventually eight banding sequences were found: melA1, melB1, melC1, melD1, melE1, melF1, and melG1; only melD2 was found in two larvae from the Sunoga river. Analysis of phylogenetic tree and estimated genetic distances has shown not all COI gene sequences of Ch.melanotus in GenBank and BOLD to belong to this species. The lower distance of 0.4% was observed between two sequences from the Yaroslavl region and Finland, apparently these are true Ch.melanotus sequences. The distances between true Ch.melanotus and other sequences from Finland were 9.5% and 12.4%, and from Sweden it was 11%. The average genetic distance between studied sequences of 9.1% is out of the range of the 3% threshold previously determined for chironomids. According to our estimates, there are two sequences with a distance of 2.9% that may belong to Ch.annularius Meigen, 1818, and one sequence with a genetic distance of 2.1%, may belonging to Ch.cingulatus Meigen, 1830, which has been confirmed karyologically. Another two sequences form a separate cluster. We suggest that they either belong to a known species, but are not present in the databases, or belong to a distinct, undescribed species.
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Comparative Cytogenetics is a peer-reviewed, open-access, rapid online journal launched to accelerate research on all aspects of plant and animal cytogenetics, karyosystematics, and molecular systematics.
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