黏菌的基因组大小和GC含量

IF 1.9 2区 生物学 Q4 MICROBIOLOGY
Shu Li , Bao Qi , Xueyan Peng , Wei Wang , Wan Wang , Pu Liu , Bao Liu , Zhanwu Peng , Qi Wang , Yu Li
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引用次数: 0

摘要

已被描述的黏菌种类超过1272种,占所有变形虫种类的一半以上。然而,仅报道了三种黏菌的基因组大小。因此,我们使用流式细胞术对144种黏菌的基因组大小和GC含量进化进行了广泛的调查和基于系统发育的分析。黏菌基因组大小为18.7 ~ 470.3 Mb, GC含量为38.7% ~ 70.1%。与深色孢子进化支相比,浅色孢子进化支显示出更大的基因组大小和更多的序列内基因组大小变异。在亮芽和暗芽进化枝中,GC含量与基因组大小均呈正相关,而在亮芽进化枝中,孢子大小与基因组大小和GC含量呈正相关。我们提供了黏菌的第一个基因组大小数据集,我们的结果将为未来黏菌的研究提供有用的信息,如基因组测序。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome size and GC content of myxomycetes

More than 1272 myxomycetes species have been described, accounting for more than half of all Amoebozoa species. However, the genome size of only three myxomycetes species has been reported. Therefore, we used flow cytometry to present an extensive survey and a phylogeny-based analysis of genome size and GC content evolution in 144 myxomycetes species. The genome size of myxomycetes ranged from 18.7 Mb to 470.3 Mb, and the GC content ranged from 38.7% to 70.1%. Bright-spored clade showed larger genome sizes and more intra-order genome size variations than the dark-spored clade. GC content and genome size were positively correlated in both bright-spored and dark-spored clades, and spore size was positively correlated with genome size and GC content in the bright-spored clade. We provided the first genome size data set in Myxomycetes, and our results will provide helpful information for future Myxomycetes studies, such as genome sequencing.

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来源期刊
European journal of protistology
European journal of protistology 生物-微生物学
CiteScore
4.60
自引率
20.70%
发文量
55
审稿时长
14.6 weeks
期刊介绍: Articles deal with protists, unicellular organisms encountered free-living in various habitats or as parasites or used in basic research or applications. The European Journal of Protistology covers topics such as the structure and systematics of protists, their development, ecology, molecular biology and physiology. Beside publishing original articles the journal offers a forum for announcing scientific meetings. Reviews of recently published books are included as well. With its diversity of topics, the European Journal of Protistology is an essential source of information for every active protistologist and for biologists of various fields.
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