一种新的基于卷积神经网络和变换器的医学图像分割深度学习模型。

IF 3.9 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Zhuo Zhang, Hongbing Wu, Huan Zhao, Yicheng Shi, Jifang Wang, Hua Bai, Baoshan Sun
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引用次数: 0

摘要

医学图像的精确分割对于临床决策至关重要,深度学习技术在这一领域已经取得了显著的成果。然而,结合了变换器和卷积神经网络的现有分割模型通常在U型网络中使用跳跃连接,这可能会限制它们在医学图像中捕获上下文信息的能力。为了解决这一限制,我们提出了一种协调的移动和剩余变压器UNet(MRC-TransUNet),它结合了变压器和UNet架构的优势。我们的方法使用轻量级的MR-ViT来解决语义差距,并使用交互注意力模块来补偿潜在的细节损失。为了更好地探索长期上下文信息,我们仅在第一层中使用跳过连接,并在随后的下采样层中添加MR ViT和RPA模块。在我们的研究中,我们在三个不同的医学图像分割数据集上评估了我们提出的方法的有效性,即乳腺、大脑和肺部。我们提出的方法在各种评估指标方面优于最先进的方法,包括Dice系数和Hausdorff距离。这些结果表明,我们提出的方法可以显著提高医学图像分割的准确性,具有临床应用的潜力。拟议MRC TransUNet的说明。对于输入的医学图像,我们首先对它们进行固有的下采样操作,然后使用MR ViT替换原始的跳跃连接结构。RPA模块对不同尺度的输出特征表示进行融合。最后,执行上采样操作以融合特征以将它们恢复到与输入图像相同的分辨率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A Novel Deep Learning Model for Medical Image Segmentation with Convolutional Neural Network and Transformer.

A Novel Deep Learning Model for Medical Image Segmentation with Convolutional Neural Network and Transformer.

Accurate segmentation of medical images is essential for clinical decision-making, and deep learning techniques have shown remarkable results in this area. However, existing segmentation models that combine transformer and convolutional neural networks often use skip connections in U-shaped networks, which may limit their ability to capture contextual information in medical images. To address this limitation, we propose a coordinated mobile and residual transformer UNet (MRC-TransUNet) that combines the strengths of transformer and UNet architectures. Our approach uses a lightweight MR-ViT to address the semantic gap and a reciprocal attention module to compensate for the potential loss of details. To better explore long-range contextual information, we use skip connections only in the first layer and add MR-ViT and RPA modules in the subsequent downsampling layers. In our study, we evaluated the effectiveness of our proposed method on three different medical image segmentation datasets, namely, breast, brain, and lung. Our proposed method outperformed state-of-the-art methods in terms of various evaluation metrics, including the Dice coefficient and Hausdorff distance. These results demonstrate that our proposed method can significantly improve the accuracy of medical image segmentation and has the potential for clinical applications. Illustration of the proposed MRC-TransUNet. For the input medical images, we first subject them to an intrinsic downsampling operation and then replace the original jump connection structure using MR-ViT. The output feature representations at different scales are fused by the RPA module. Finally, an upsampling operation is performed to fuse the features to restore them to the same resolution as the input image.

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来源期刊
Interdisciplinary Sciences: Computational Life Sciences
Interdisciplinary Sciences: Computational Life Sciences MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
8.60
自引率
4.20%
发文量
55
期刊介绍: Interdisciplinary Sciences--Computational Life Sciences aims to cover the most recent and outstanding developments in interdisciplinary areas of sciences, especially focusing on computational life sciences, an area that is enjoying rapid development at the forefront of scientific research and technology. The journal publishes original papers of significant general interest covering recent research and developments. Articles will be published rapidly by taking full advantage of internet technology for online submission and peer-reviewing of manuscripts, and then by publishing OnlineFirstTM through SpringerLink even before the issue is built or sent to the printer. The editorial board consists of many leading scientists with international reputation, among others, Luc Montagnier (UNESCO, France), Dennis Salahub (University of Calgary, Canada), Weitao Yang (Duke University, USA). Prof. Dongqing Wei at the Shanghai Jiatong University is appointed as the editor-in-chief; he made important contributions in bioinformatics and computational physics and is best known for his ground-breaking works on the theory of ferroelectric liquids. With the help from a team of associate editors and the editorial board, an international journal with sound reputation shall be created.
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