{"title":"海洋肠杆菌分离物中与PET降解相关的聚酯酶活性的生物勘探。","authors":"Denisse Galarza-Verkovitch, Onur Turak, Jutta Wiese, Tanja Rahn, Ute Hentschel, Erik Borchert","doi":"10.3934/microbiol.2023027","DOIUrl":null,"url":null,"abstract":"<p><p>Plastics have quickly become an integral part of modern life. Due to excessive production and improper waste disposal, they are recognized as contaminants present in practically all habitat types. Although there are several polymers, polyethylene terephthalate (PET) is of particular concern due to its abundance in the environment. There is a need for a solution that is both cost-effective and ecologically friendly to address this pollutant. The use of microbial depolymerizing enzymes could offer a biological avenue for plastic degradation, though the full potential of these enzymes is yet to be uncovered. The purpose of this study was to use (1) plate-based screening methods to investigate the plastic degradation potential of marine bacteria from the order Enterobacterales collected from various organismal and environmental sources, and (2) perform genome-based analysis to identify polyesterases potentially related to PET degradation. 126 bacterial isolates were obtained from the strain collection of RD3, Research Unit Marine Symbioses-GEOMAR-and sequentially tested for esterase and polyesterase activity, in combination here referred to as PETase-like activity. The results show that members of the microbial families <i>Alteromonadaceae</i>, <i>Shewanellaceae</i>, and <i>Vibrionaceae</i>, derived from marine sponges and bryozoans, are the most promising candidates within the order Enterobacterales. Furthermore, 389 putative hydrolases from the α/β superfamily were identified in 23 analyzed genomes, of which 22 were sequenced for this study. Several candidates showed similarities with known PETases, indicating underlying enzymatic potential within the order Enterobacterales for PET degradation.</p>","PeriodicalId":46108,"journal":{"name":"AIMS Microbiology","volume":"9 3","pages":"518-539"},"PeriodicalIF":2.7000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462454/pdf/","citationCount":"1","resultStr":"{\"title\":\"Bioprospecting for polyesterase activity relevant for PET degradation in marine Enterobacterales isolates.\",\"authors\":\"Denisse Galarza-Verkovitch, Onur Turak, Jutta Wiese, Tanja Rahn, Ute Hentschel, Erik Borchert\",\"doi\":\"10.3934/microbiol.2023027\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Plastics have quickly become an integral part of modern life. Due to excessive production and improper waste disposal, they are recognized as contaminants present in practically all habitat types. Although there are several polymers, polyethylene terephthalate (PET) is of particular concern due to its abundance in the environment. There is a need for a solution that is both cost-effective and ecologically friendly to address this pollutant. The use of microbial depolymerizing enzymes could offer a biological avenue for plastic degradation, though the full potential of these enzymes is yet to be uncovered. The purpose of this study was to use (1) plate-based screening methods to investigate the plastic degradation potential of marine bacteria from the order Enterobacterales collected from various organismal and environmental sources, and (2) perform genome-based analysis to identify polyesterases potentially related to PET degradation. 126 bacterial isolates were obtained from the strain collection of RD3, Research Unit Marine Symbioses-GEOMAR-and sequentially tested for esterase and polyesterase activity, in combination here referred to as PETase-like activity. The results show that members of the microbial families <i>Alteromonadaceae</i>, <i>Shewanellaceae</i>, and <i>Vibrionaceae</i>, derived from marine sponges and bryozoans, are the most promising candidates within the order Enterobacterales. Furthermore, 389 putative hydrolases from the α/β superfamily were identified in 23 analyzed genomes, of which 22 were sequenced for this study. Several candidates showed similarities with known PETases, indicating underlying enzymatic potential within the order Enterobacterales for PET degradation.</p>\",\"PeriodicalId\":46108,\"journal\":{\"name\":\"AIMS Microbiology\",\"volume\":\"9 3\",\"pages\":\"518-539\"},\"PeriodicalIF\":2.7000,\"publicationDate\":\"2023-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10462454/pdf/\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"AIMS Microbiology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3934/microbiol.2023027\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"AIMS Microbiology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3934/microbiol.2023027","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 1
摘要
塑料已迅速成为现代生活中不可或缺的一部分。由于过度生产和不当的废物处理,它们被认为是几乎所有生境类型中存在的污染物。虽然有几种聚合物,但聚对苯二甲酸乙二醇酯(PET)由于其在环境中的丰度而受到特别关注。需要一种既具有成本效益又对生态友好的解决方案来处理这种污染物。微生物解聚酶的使用可以为塑料降解提供生物途径,尽管这些酶的全部潜力尚未被发现。本研究的目的是使用(1)基于平板的筛选方法来研究从各种有机和环境来源中收集的肠杆菌目海洋细菌的塑料降解潜力;(2)进行基因组分析以鉴定可能与PET降解相关的聚酯酶。从海洋共生研究单元(Research Unit Marine symbioses - geomar)的RD3菌株收集中获得126株细菌,并依次检测酯酶和聚酯酶活性,这里将两者结合称为pase样活性。结果表明,从海绵和苔藓虫中分离出来的Alteromonadaceae、Shewanellaceae和Vibrionaceae是肠杆菌目中最有希望的候选微生物。此外,在分析的23个基因组中鉴定出389个来自α/β超家族的推定水解酶,其中22个测序用于本研究。一些候选物显示出与已知的PET酶的相似性,表明肠杆菌目中潜在的PET降解酶潜力。
Bioprospecting for polyesterase activity relevant for PET degradation in marine Enterobacterales isolates.
Plastics have quickly become an integral part of modern life. Due to excessive production and improper waste disposal, they are recognized as contaminants present in practically all habitat types. Although there are several polymers, polyethylene terephthalate (PET) is of particular concern due to its abundance in the environment. There is a need for a solution that is both cost-effective and ecologically friendly to address this pollutant. The use of microbial depolymerizing enzymes could offer a biological avenue for plastic degradation, though the full potential of these enzymes is yet to be uncovered. The purpose of this study was to use (1) plate-based screening methods to investigate the plastic degradation potential of marine bacteria from the order Enterobacterales collected from various organismal and environmental sources, and (2) perform genome-based analysis to identify polyesterases potentially related to PET degradation. 126 bacterial isolates were obtained from the strain collection of RD3, Research Unit Marine Symbioses-GEOMAR-and sequentially tested for esterase and polyesterase activity, in combination here referred to as PETase-like activity. The results show that members of the microbial families Alteromonadaceae, Shewanellaceae, and Vibrionaceae, derived from marine sponges and bryozoans, are the most promising candidates within the order Enterobacterales. Furthermore, 389 putative hydrolases from the α/β superfamily were identified in 23 analyzed genomes, of which 22 were sequenced for this study. Several candidates showed similarities with known PETases, indicating underlying enzymatic potential within the order Enterobacterales for PET degradation.