肝细胞肥胖引起的钙动力学依赖性ATP降解、IP3和NADH产生的数值模拟。

IF 1.8 4区 生物学 Q3 BIOPHYSICS
Vedika Mishra, Neeru Adlakha
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引用次数: 1

摘要

钙(Ca[公式:见文本])信号在调节几乎每个细胞的各种过程以维持其结构和功能方面起着至关重要的作用。许多研究者对包括肝细胞在内的多种细胞中的钙动力学进行了研究,但钙信号在正常细胞和肥胖细胞中分别参与ATP降解率、IP[公式:见文本]和NADH生成率等多种过程的调节和失调的机制尚不清楚。本文利用钙的反应扩散方程,提出了正常和肥胖条件下肝细胞ATP降解率、IP[公式:见文]和NADH生成率耦合的钙动力学模型。源内流、缓冲液、内质网(ER)、线粒体钙单转运蛋白(MCU)和Na[公式:见文]/Ca[公式:见文]交换(NCX)等过程已纳入模型。沿空间维度采用线性有限元法,沿时间维度采用Crank-Nicolson法进行数值模拟。对正常肝细胞和肥胖引起的肝细胞均获得了上述结果。这些结果的对比研究表明,肥胖在Ca[公式:见文]动力学以及ATP降解率、IP[公式:见文]和NADH生成率方面造成了显著差异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Numerical simulation of calcium dynamics dependent ATP degradation, IP3 and NADH production due to obesity in a hepatocyte cell

Numerical simulation of calcium dynamics dependent ATP degradation, IP3 and NADH production due to obesity in a hepatocyte cell

Calcium (Ca\({}^{2+}\)) signals have a crucial role in regulating various processes of almost every cell to maintain its structure and function. Calcium dynamics has been studied in various cells including hepatocytes by many researchers, but the mechanisms of calcium signals involved in regulation and dysregulation of various processes like ATP degradation rate, IP\(_{3}\) and NADH production rate respectively in normal and obese cells are still poorly understood. In this paper, a reaction diffusion equation of calcium is employed to propose a model of calcium dynamics by coupling ATP degradation rate, IP\(_{3}\) and NADH production rate in hepatocyte cells under normal and obese conditions. The processes like source influx, buffer, endoplasmic reticulum (ER), mitochondrial calcium uniporters (MCU) and Na\(^{+}\)/Ca\(^{2+}\) exchanger (NCX) have been incorporated in the model. Linear finite element method is used along spatial dimension, and Crank-Nicolson method is used along temporal dimension for numerical simulation. The results have been obtained for the normal hepatocyte cells and for cells due to obesity. The comparative study of these results reveal significant difference caused due to obesity in Ca\(^{2+}\) dynamics as well as in ATP degradation rate, IP\(_{3}\) and NADH production rate.

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来源期刊
Journal of Biological Physics
Journal of Biological Physics 生物-生物物理
CiteScore
3.00
自引率
5.60%
发文量
20
审稿时长
>12 weeks
期刊介绍: Many physicists are turning their attention to domains that were not traditionally part of physics and are applying the sophisticated tools of theoretical, computational and experimental physics to investigate biological processes, systems and materials. The Journal of Biological Physics provides a medium where this growing community of scientists can publish its results and discuss its aims and methods. It welcomes papers which use the tools of physics in an innovative way to study biological problems, as well as research aimed at providing a better understanding of the physical principles underlying biological processes.
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