CRISPR/Cas9 Essential Gene Editing in Drosophila.

IF 2 4区 生物学 Q4 CELL BIOLOGY
I S Osadchiy, S O Kamalyan, K Y Tumashova, P G Georgiev, O G Maksimenko
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引用次数: 0

Abstract

Since the addition of the CRISPR/Cas9 technology to the genetic engineering toolbox, the problems of low efficiency and off-target effects hamper its widespread use in all fields of life sciences. Furthermore, essential gene knockout usually results in failure and it is often not obvious whether the gene of interest is an essential one. Here, we report on a new strategy to improve the CRISPR/Cas9 genome editing, which is based on the idea that editing efficiency is tightly linked to how essential the gene to be modified is. The more essential the gene, the less the efficiency of the editing and the larger the number of off-targets, due to the survivorship bias. Considering this, we generated deletions of three essential genes in Drosophila: trf2, top2, and mep-1, using fly strains with previous target gene overexpression ("pre-rescued" genetic background).

Abstract Image

Abstract Image

果蝇CRISPR/Cas9必需基因编辑。
自从CRISPR/Cas9技术加入基因工程工具箱以来,低效率和脱靶效应的问题阻碍了它在生命科学各个领域的广泛应用。此外,必需基因敲除通常会导致失败,并且通常不清楚感兴趣的基因是否是必需基因。在这里,我们报道了一种改进CRISPR/Cas9基因组编辑的新策略,该策略基于这样一种观点,即编辑效率与待修饰基因的重要性密切相关。基因越重要,编辑效率越低,由于生存偏差,脱靶数量越大。考虑到这一点,我们使用先前靶基因过表达的苍蝇菌株(“预先拯救”的遗传背景),在果蝇中产生了三个基本基因的缺失:trf2、top2和mep-1。
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来源期刊
Acta Naturae
Acta Naturae 农林科学-林学
CiteScore
3.50
自引率
5.00%
发文量
0
审稿时长
>12 weeks
期刊介绍: Acta Naturae is an international journal on life sciences based in Moscow, Russia. Our goal is to present scientific work and discovery in molecular biology, biochemistry, biomedical disciplines and biotechnology. These fields represent the most important priorities for the research and engineering development both in Russia and worldwide. Acta Naturae is also a periodical for those who are curious in various aspects of biotechnological business, innovations in pharmaceutical areas, intellectual property protection and social consequences of scientific progress. The journal publishes analytical industrial surveys focused on the development of different spheres of modern life science and technology. Being a radically new and totally unique journal in Russia, Acta Naturae is useful to both representatives of fundamental research and experts in applied sciences.
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