Personalized estimates of brain cortical structural variability in individuals with Autism spectrum disorder: the predictor of brain age and neurobiology relevance.
Yingying Xie, Jie Sun, Weiqi Man, Zhang Zhang, Ningnannan Zhang
{"title":"Personalized estimates of brain cortical structural variability in individuals with Autism spectrum disorder: the predictor of brain age and neurobiology relevance.","authors":"Yingying Xie, Jie Sun, Weiqi Man, Zhang Zhang, Ningnannan Zhang","doi":"10.1186/s13229-023-00558-1","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Autism spectrum disorder (ASD) is a heritable condition related to brain development that affects a person's perception and socialization with others. Here, we examined variability in the brain morphology in ASD children and adolescent individuals at the level of brain cortical structural profiles and the level of each brain regional measure.</p><p><strong>Methods: </strong>We selected brain structural MRI data in 600 ASDs and 729 normal controls (NCs) from Autism Brain Imaging Data Exchange (ABIDE). The personalized estimate of similarity between gray matter volume (GMV) profiles of an individual to that of others in the same group was assessed by using the person-based similarity index (PBSI). Regional contributions to PBSI score were utilized for brain age gap estimation (BrainAGE) prediction model establishment, including support vector regression (SVR), relevance vector regression (RVR), and Gaussian process regression (GPR). The association between BrainAGE prediction in ASD and clinical performance was investigated. We further explored the related inter-regional profiles of gene expression from the Allen Human Brain Atlas with variability differences in the brain morphology between groups.</p><p><strong>Results: </strong>The PBSI score of GMV was negatively related to age regardless of the sample group, and the PBSI score was significantly lower in ASDs than in NCs. The regional contributions to the PBSI score of 126 brain regions in ASDs showed significant differences compared to NCs. RVR model achieved the best performance for predicting brain age. Higher inter-individual brain morphology variability was related to increased brain age, specific to communication symptoms. A total of 430 genes belonging to various pathways were identified as associated with brain cortical morphometric variation. The pathways, including short-term memory, regulation of system process, and regulation of nervous system process, were dominated mainly by gene sets for manno midbrain neurotypes.</p><p><strong>Limitations: </strong>There is a sample mismatch between the gene expression data and brain imaging data from ABIDE. A larger sample size can contribute to the model training of BrainAGE and the validation of the results.</p><p><strong>Conclusions: </strong>ASD has personalized heterogeneity brain morphology. The brain age gap estimation and transcription-neuroimaging associations derived from this trait are replenished in an additional direction to boost the understanding of the ASD brain.</p>","PeriodicalId":18733,"journal":{"name":"Molecular Autism","volume":"14 1","pages":"27"},"PeriodicalIF":6.3000,"publicationDate":"2023-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375633/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular Autism","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1186/s13229-023-00558-1","RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
Abstract
Background: Autism spectrum disorder (ASD) is a heritable condition related to brain development that affects a person's perception and socialization with others. Here, we examined variability in the brain morphology in ASD children and adolescent individuals at the level of brain cortical structural profiles and the level of each brain regional measure.
Methods: We selected brain structural MRI data in 600 ASDs and 729 normal controls (NCs) from Autism Brain Imaging Data Exchange (ABIDE). The personalized estimate of similarity between gray matter volume (GMV) profiles of an individual to that of others in the same group was assessed by using the person-based similarity index (PBSI). Regional contributions to PBSI score were utilized for brain age gap estimation (BrainAGE) prediction model establishment, including support vector regression (SVR), relevance vector regression (RVR), and Gaussian process regression (GPR). The association between BrainAGE prediction in ASD and clinical performance was investigated. We further explored the related inter-regional profiles of gene expression from the Allen Human Brain Atlas with variability differences in the brain morphology between groups.
Results: The PBSI score of GMV was negatively related to age regardless of the sample group, and the PBSI score was significantly lower in ASDs than in NCs. The regional contributions to the PBSI score of 126 brain regions in ASDs showed significant differences compared to NCs. RVR model achieved the best performance for predicting brain age. Higher inter-individual brain morphology variability was related to increased brain age, specific to communication symptoms. A total of 430 genes belonging to various pathways were identified as associated with brain cortical morphometric variation. The pathways, including short-term memory, regulation of system process, and regulation of nervous system process, were dominated mainly by gene sets for manno midbrain neurotypes.
Limitations: There is a sample mismatch between the gene expression data and brain imaging data from ABIDE. A larger sample size can contribute to the model training of BrainAGE and the validation of the results.
Conclusions: ASD has personalized heterogeneity brain morphology. The brain age gap estimation and transcription-neuroimaging associations derived from this trait are replenished in an additional direction to boost the understanding of the ASD brain.
背景:自闭症谱系障碍(ASD)是一种与大脑发育有关的遗传性疾病,影响一个人的感知和与他人的社交。在这里,我们在大脑皮层结构剖面水平和每个大脑区域测量水平上检查了ASD儿童和青少年个体大脑形态的变异性。方法:选择来自自闭症脑成像数据交换(Autism brain Imaging data Exchange,简称ABIDE)的600例asd和729例正常对照(nc)的脑结构MRI数据。使用基于人的相似性指数(PBSI)评估个体与同一组中其他人灰质体积(GMV)概况之间的个性化相似性估计。利用PBSI评分的区域贡献建立脑年龄差距预测模型,包括支持向量回归(SVR)、相关向量回归(RVR)和高斯过程回归(GPR)。研究了脑年龄预测与ASD临床表现之间的关系。我们进一步探索了来自Allen人脑图谱的基因表达的相关区域间特征,以及不同组间大脑形态的变异性差异。结果:无论样本组如何,GMV的PBSI评分与年龄呈负相关,且asd的PBSI评分明显低于nc。与nc相比,asd患者126个脑区对PBSI评分的区域贡献有显著差异。RVR模型预测脑年龄的效果最好。较高的个体间脑形态变异与脑年龄的增加有关,特别是与交流症状有关。共鉴定出430个不同通路的基因与大脑皮层形态测量学变异有关。短期记忆、系统过程调控和神经系统过程调控通路主要由甘露中脑神经型基因组主导。局限性:基因表达数据和来自ABIDE的脑成像数据之间存在样本不匹配。更大的样本量有助于BrainAGE的模型训练和结果的验证。结论:ASD具有个性化的脑形态异质性。大脑年龄差距估计和由此特征衍生的转录-神经影像学关联在另一个方向上得到补充,以促进对ASD大脑的理解。
期刊介绍:
Molecular Autism is a peer-reviewed, open access journal that publishes high-quality basic, translational and clinical research that has relevance to the etiology, pathobiology, or treatment of autism and related neurodevelopmental conditions. Research that includes integration across levels is encouraged. Molecular Autism publishes empirical studies, reviews, and brief communications.