CDCA7 serves as a novel prognostic marker in human hepatocellular carcinoma.

IF 6.5 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Yuan Tian, Wenwen Han, Long Fu, Kaiji Lv, Shugeng Wu
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引用次数: 0

Abstract

c-Myc oncogene plays an important role in tumorigenesis, cell division cycle associated 7 (CDCA7), recently found that it is a direct target gene of c-Myc, is upregulated in many tumors, but its role in tumor progression is still poorly understood. CDCA7 expression and prognosis were analyzed in hepatocellular carcinoma using TIMER2.0 and Kaplan-Meier databases, while genomic changes were studied using cbioportal. LinkedOmics identified relevant genes and WebGestalt analyzed the associated pathways. Protein interaction networks were explored using the STRING database, and the core PPI network was analyzed with the MCODE plugin of Cytoscape. CDCA7 expression was detected in 30 paired HCC specimens by real-time PCR, and its effect on HCC cell proliferation was determined in vitro. CDCA7 expression was frequently up-regulated in human hepatocellular carcinoma (HCC), and its expression was positively correlated with prognosis. The TIMER2.0 database showed that CDCA7 was differentially expressed in hepatocellular carcinoma, with high expression in tumor tissues and low expression in normal tissues. The Kaplan-Meier database shows that high CDCA7 expression has a worse prognosis. The cBioportal database showed that the genomic change rate of CDCA7 in hepatocellular carcinoma was 2.15%, including mutations, amplifications, and deep deletions. Pathway analysis of related genes showed that CDCA7-related genes were mainly focused on cell division-related pathways. The experimental results also validate our study. CDCA7 could contribute to HCC progression and raise the possibility that CDCA7 is a potential new therapeutic target for HCC treatment.

CDCA7 是人类肝细胞癌的新型预后标志物。
c-Myc癌基因在肿瘤发生中起着重要作用,细胞分裂周期相关7(CDCA7)最近被发现是c-Myc的直接靶基因,在许多肿瘤中上调,但其在肿瘤进展中的作用仍不甚明了。我们利用 TIMER2.0 和 Kaplan-Meier 数据库分析了 CDCA7 在肝细胞癌中的表达和预后,并利用 cbioportal 研究了基因组的变化。LinkedOmics 确定了相关基因,WebGestalt 分析了相关通路。利用STRING数据库探索了蛋白质相互作用网络,并利用Cytoscape的MCODE插件分析了核心PPI网络。通过实时 PCR 检测了 30 例配对 HCC 标本中 CDCA7 的表达,并在体外测定了它对 HCC 细胞增殖的影响。CDCA7 在人类肝细胞癌(HCC)中经常上调,其表达与预后呈正相关。TIMER2.0数据库显示,CDCA7在肝细胞癌中呈差异表达,肿瘤组织中高表达,正常组织中低表达。Kaplan-Meier数据库显示,CDCA7高表达预后较差。cBioportal 数据库显示,肝细胞癌中 CDCA7 的基因组变化率为 2.15%,包括突变、扩增和深度缺失。相关基因的通路分析表明,CDCA7相关基因主要集中在细胞分裂相关通路上。实验结果也验证了我们的研究。CDCA7可能导致HCC进展,并有可能成为治疗HCC的新靶点。
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来源期刊
Biotechnology & Genetic Engineering Reviews
Biotechnology & Genetic Engineering Reviews BIOTECHNOLOGY & APPLIED MICROBIOLOGY-GENETICS & HEREDITY
CiteScore
6.50
自引率
3.10%
发文量
33
期刊介绍: Biotechnology & Genetic Engineering Reviews publishes major invited review articles covering important developments in industrial, agricultural and medical applications of biotechnology.
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