Deep Learning With Radiogenomics Towards Personalized Management of Gliomas

Abstract

A state-of-the-art interdisciplinary survey on multi-modal radiogenomic approaches is presented involving applications to the diagnosis and personalized management of gliomas a common kind of brain tumors through noninvasive imaging integrated with genomic information. It encompasses mining tumor radioimages employing deep learning for the automated extraction of relevant features from the segmented volume of interest (VOI). Gene expression values from surgically extracted tumor tissues are often simultaneously analyzed to determine patient specific features. Association between genomic and radiomic features are also explored in some cases to determine the imaging surrogates. Deep learning and transfer learning are typically exploited for efficient knowledge discovery and decision-making. Some studies on survival prediction ensemble learning and interactive learning are also included. The literature mainly focuses on magnetic resonance imaging (MRI) data of the brain for learning and validation and generally involves the NIH TCIA and TCGA repositories as well as the BraTS Challenge databases.