{"title":"<i>De Novo</i> Genome Assembly of <i>Auanema Melissensis</i>, a Trioecious Free-Living Nematode.","authors":"Sophie Tandonnet, Maairah Haq, Anisa Turner, Theresa Grana, Panagiota Paganopoulou, Sally Adams, Sandhya Dhawan, Natsumi Kanzaki, Isabelle Nuez, Marie-Anne Félix, André Pires-daSilva","doi":"10.2478/jofnem-2022-0059","DOIUrl":null,"url":null,"abstract":"<p><p>Nematodes of the genus <i>Auanema</i> are interesting models for studying sex determination mechanisms because their populations consist of three sexual morphs (males, females, and hermaphrodites) and produce skewed sex ratios. Here, we introduce a new undescribed species of this genus, <i>Auanema melissensis</i> n. sp., together with its draft nuclear genome. This species is also trioecious and does not cross with the other described species <i>A. rhodensis</i> or <i>A. freiburgensis</i>. Similar to <i>A. freiburgensis</i>, <i>A. melissensis</i>' maternal environment influences the hermaphrodite versus female sex determination of the offspring. The genome of <i>A. melissensis</i> is ~60 Mb, containing 11,040 protein-coding genes and 8.07% of repeat sequences. Using the estimated ancestral chromosomal gene content (Nigon elements), it was possible to identify putative X chromosome scaffolds.</p>","PeriodicalId":16475,"journal":{"name":"Journal of nematology","volume":null,"pages":null},"PeriodicalIF":1.4000,"publicationDate":"2023-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984802/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of nematology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.2478/jofnem-2022-0059","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/2/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ZOOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Nematodes of the genus Auanema are interesting models for studying sex determination mechanisms because their populations consist of three sexual morphs (males, females, and hermaphrodites) and produce skewed sex ratios. Here, we introduce a new undescribed species of this genus, Auanema melissensis n. sp., together with its draft nuclear genome. This species is also trioecious and does not cross with the other described species A. rhodensis or A. freiburgensis. Similar to A. freiburgensis, A. melissensis' maternal environment influences the hermaphrodite versus female sex determination of the offspring. The genome of A. melissensis is ~60 Mb, containing 11,040 protein-coding genes and 8.07% of repeat sequences. Using the estimated ancestral chromosomal gene content (Nigon elements), it was possible to identify putative X chromosome scaffolds.
期刊介绍:
Journal of Nematology is the official technical and scientific communication publication of the Society of Nematologists since 1969. The journal publishes original papers on all aspects of basic, applied, descriptive, theoretical or experimental nematology and adheres to strict peer-review policy. Other categories of papers include invited reviews, research notes, abstracts of papers presented at annual meetings, and special publications as appropriate.