Determination of acidic dissociation constants of glutamine and isoleucine in water using ab initio methods

IF 0.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
F. Koohyar
{"title":"Determination of acidic dissociation constants of glutamine and isoleucine in water using ab initio methods","authors":"F. Koohyar","doi":"10.5505/TJB.2014.04578","DOIUrl":null,"url":null,"abstract":"Objective: In this study, pKa values of glutamine and isoleucine were determined in aqueous solution by ab initio and DFT methods. To explain the obtained values of pKa, the molecular conformations and solute-solvent interactions of the anions, cations, and neutrals molecules of glutamine and isoleucine were investigated. The experimental determination of these values, apart from been laborious, is a challenge because of the low water solubility of these compounds. Methods: We have evaluated different models to determination of pKa, using the density functional theory (DFT) method at the B3LYP level of the theory. Results: this study shows the several ionization reactions and equilibriums in protic solvent, which possess a high hydrogen-band-donor capability. These reactions and equilibriums constitute the indispensable theoretical basis for calculation of glutamine and isoleucine acidity constants. Tomasi’s method was used to analyze the formation of intermolecular hydrogen bonds between the existent species and water molecules. In this way, it is proposed that in alkaline aqueous solutions the cation, anion, and neutral species of glutamine and isoleucine are solvated with one, two, three, and four molecules of water, respectively. In this study, there is comparable agreement between the experimental and calculated pKa values for the acid-base reactions proposed. Conclusion: In this paper, The calculations performed at the B3LYP/6-31+G(d) levels of theory using Tomasi’s method allowed us to prove that cations, neutral molecules, and anions form IHBs with some molecules of water. It is shown that, theoretically calculated pKa values are in good agreement with the existing experimental pKa values, which are determined from potentiometric titration and UV–visible spectrophotometric measurements.","PeriodicalId":23355,"journal":{"name":"Turkish Journal of Biochemistry-turk Biyokimya Dergisi","volume":null,"pages":null},"PeriodicalIF":0.6000,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Turkish Journal of Biochemistry-turk Biyokimya Dergisi","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.5505/TJB.2014.04578","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 6

Abstract

Objective: In this study, pKa values of glutamine and isoleucine were determined in aqueous solution by ab initio and DFT methods. To explain the obtained values of pKa, the molecular conformations and solute-solvent interactions of the anions, cations, and neutrals molecules of glutamine and isoleucine were investigated. The experimental determination of these values, apart from been laborious, is a challenge because of the low water solubility of these compounds. Methods: We have evaluated different models to determination of pKa, using the density functional theory (DFT) method at the B3LYP level of the theory. Results: this study shows the several ionization reactions and equilibriums in protic solvent, which possess a high hydrogen-band-donor capability. These reactions and equilibriums constitute the indispensable theoretical basis for calculation of glutamine and isoleucine acidity constants. Tomasi’s method was used to analyze the formation of intermolecular hydrogen bonds between the existent species and water molecules. In this way, it is proposed that in alkaline aqueous solutions the cation, anion, and neutral species of glutamine and isoleucine are solvated with one, two, three, and four molecules of water, respectively. In this study, there is comparable agreement between the experimental and calculated pKa values for the acid-base reactions proposed. Conclusion: In this paper, The calculations performed at the B3LYP/6-31+G(d) levels of theory using Tomasi’s method allowed us to prove that cations, neutral molecules, and anions form IHBs with some molecules of water. It is shown that, theoretically calculated pKa values are in good agreement with the existing experimental pKa values, which are determined from potentiometric titration and UV–visible spectrophotometric measurements.
用从头算法测定谷氨酰胺和异亮氨酸在水中的酸性解离常数
目的:用从头算法和离散傅立叶变换法测定水溶液中谷氨酰胺和异亮氨酸的pKa值。为了解释得到的pKa值,研究了谷氨酰胺和异亮氨酸的阴离子、阳离子和中性分子的分子构象和溶质-溶剂相互作用。这些值的实验测定,除了是费力的,是一个挑战,因为这些化合物的低水溶性。方法:采用密度泛函理论(DFT)方法,在理论的B3LYP水平上对不同的pKa测定模型进行了评价。结果:本研究显示了质子溶剂中几种具有高氢带供体能力的电离反应和平衡。这些反应和平衡构成了计算谷氨酰胺和异亮氨酸酸度常数不可缺少的理论基础。托马西的方法被用来分析存在的物种和水分子之间的分子间氢键的形成。这样,我们提出在碱性水溶液中,谷氨酰胺和异亮氨酸的阳离子、阴离子和中性分别与1、2、3和4分子水溶剂化。在本研究中,所提出的酸碱反应的实验值和计算值之间有相当的一致性。结论:在本文中,使用Tomasi的方法在B3LYP/6-31+G(d)理论水平上进行的计算使我们能够证明阳离子、中性分子和阴离子与一些水分子形成IHBs。结果表明,理论计算的pKa值与现有的电位滴定法和紫外可见分光光度法测定的pKa值吻合较好。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
1.20
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
期刊介绍: Turkish Journal of Biochemistry (TJB), official journal of Turkish Biochemical Society, is issued electronically every 2 months. The main aim of the journal is to support the research and publishing culture by ensuring that every published manuscript has an added value and thus providing international acceptance of the “readability” of the manuscripts published in the journal.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信