Bio-Stamp: Simple Tool for Routine Biological Data Analysis

Peter T. Habib, A. Alsamman, A. Hamwieh
{"title":"Bio-Stamp: Simple Tool for Routine Biological Data Analysis","authors":"Peter T. Habib, A. Alsamman, A. Hamwieh","doi":"10.21767/2386-5180.100265","DOIUrl":null,"url":null,"abstract":"The massive extension in biological data induced a need for user-friendly bioinformatics tools could be used for routine biological data manipulation. Bio-Stamp is a simple analytical software implements variety of tools to perform common data analysis on different biological data types and databases. Bio-Stamp provide general aspects of data analysis such as handling nucleotide data, fetching different data formats information, NGS quality control, data visualization, performing multiple sequence alignment and sequence BLAST. These tools accept common biological data formats and produce humanreadable output files could be stored on local computer machines. Bio-Stamp has a user-friendly graphical user interface to simplify massive biological data analysis and consume less memory and processing power. Bio-Stamp source code was written through Python programming language which provides less memory usage and initial start-up time. Bio-Stamp is free and open source software, where its code could be modified, extended or integrated in different bioinformatics pipelines.","PeriodicalId":8195,"journal":{"name":"Annals of Clinical and Laboratory Research","volume":"7 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Annals of Clinical and Laboratory Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21767/2386-5180.100265","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

Abstract

The massive extension in biological data induced a need for user-friendly bioinformatics tools could be used for routine biological data manipulation. Bio-Stamp is a simple analytical software implements variety of tools to perform common data analysis on different biological data types and databases. Bio-Stamp provide general aspects of data analysis such as handling nucleotide data, fetching different data formats information, NGS quality control, data visualization, performing multiple sequence alignment and sequence BLAST. These tools accept common biological data formats and produce humanreadable output files could be stored on local computer machines. Bio-Stamp has a user-friendly graphical user interface to simplify massive biological data analysis and consume less memory and processing power. Bio-Stamp source code was written through Python programming language which provides less memory usage and initial start-up time. Bio-Stamp is free and open source software, where its code could be modified, extended or integrated in different bioinformatics pipelines.
Bio-Stamp:常规生物数据分析的简单工具
生物数据的大量扩展引起了对用户友好的生物信息学工具的需求,这些工具可用于常规的生物数据操作。Bio-Stamp是一款简单的分析软件,实现了多种工具,可以对不同的生物数据类型和数据库执行常见的数据分析。Bio-Stamp提供数据分析的一般方面,如处理核苷酸数据,获取不同的数据格式信息,NGS质量控制,数据可视化,执行多个序列比对和序列BLAST。这些工具接受常见的生物数据格式,并产生人类可读的输出文件,这些文件可以存储在本地计算机上。Bio-Stamp具有用户友好的图形用户界面,可简化大量生物数据分析,并消耗更少的内存和处理能力。Bio-Stamp源代码是通过Python编程语言编写的,它提供了更少的内存使用和初始启动时间。Bio-Stamp是一款免费的开源软件,其代码可以被修改、扩展或集成到不同的生物信息学管道中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信