Systemic analysis of the prognostic significance and interaction network of miR-26b-3p in cholangiocarcinoma

IF 3.1 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Xijing Yan, Zhongying Hu, Xuejiao Li, Jinliang Liang, Jun Zheng, Jiao Gong, Kunpeng Hu, Xin Sui, Rong Li
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Abstract

MicroRNAs (miRNAs) reportedly play significant roles in the progression of various cancers and hold huge potential as both diagnostic tools and therapeutic targets. Given the ongoing uncertainty surrounding the precise functions of several miRNAs in cholangiocarcinoma (CCA), this research undertakes a comprehensive analysis of CCA data sourced from Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. The present study identified a novel miRNA, specifically miR-26b-3p, which exhibited prognostic value for individuals with CCA. Notably, miR-26b-3p was upregulated within CCA samples, with an inverse correlation established with patient prognosis (Hazard Ratio = 8.19, p = 0.018). Through a combination of functional enrichment analysis, analysis of the LncRNA-miR-26b-3p-mRNA interaction network, and validation by qRT PCR and western blotting, this study uncovered the potential of miR-26b-3p in potentiating the malignant progression of CCA via regulation of essential genes (including PSMD14, XAB2, SLC4A4) implicated in processes such as endoplasmic reticulum (ER) stress and responses to misfolded proteins. Our findings introduce novel and valuable insights that position miR-26b-3p-associated genes as promising biomarkers for the diagnosis and treatment of CCA.

Abstract Image

miR-26b-3p在胆管癌中的预后意义和相互作用网络的系统分析。
据报道,微小RNA(miRNA)在各种癌症的进展中发挥着重要作用,并作为诊断工具和治疗靶点具有巨大潜力。鉴于胆管癌(CCA)中几种miRNA的精确功能仍存在不确定性,本研究对来自基因表达综合(GEO)和癌症基因组图谱(TCGA)数据库的CCA数据进行了全面分析。本研究鉴定了一种新的miRNA,特别是miR-26b-3p,它对CCA患者具有预后价值。值得注意的是,miR-26b-3p在CCA样本中上调,与患者预后呈负相关(风险比 = 8.19,p = 0.018)。通过结合功能富集分析、LncRNA-miR-26b-3p-mRNA相互作用网络的分析以及通过qRT-PCR和蛋白质印迹的验证,本研究揭示了miR-26b-3p通过调节与内质网(ER)应激和对错误折叠蛋白的反应等过程有关的必需基因(包括PSMD14、XAB2、SLC4A4)来增强CCA恶性进展的潜力。我们的发现引入了新的和有价值的见解,将miR-26b-3p相关基因定位为诊断和治疗CCA的有前景的生物标志物。
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来源期刊
Applied Biochemistry and Biotechnology
Applied Biochemistry and Biotechnology 工程技术-生化与分子生物学
CiteScore
5.70
自引率
6.70%
发文量
460
审稿时长
5.3 months
期刊介绍: This journal is devoted to publishing the highest quality innovative papers in the fields of biochemistry and biotechnology. The typical focus of the journal is to report applications of novel scientific and technological breakthroughs, as well as technological subjects that are still in the proof-of-concept stage. Applied Biochemistry and Biotechnology provides a forum for case studies and practical concepts of biotechnology, utilization, including controls, statistical data analysis, problem descriptions unique to a particular application, and bioprocess economic analyses. The journal publishes reviews deemed of interest to readers, as well as book reviews, meeting and symposia notices, and news items relating to biotechnology in both the industrial and academic communities. In addition, Applied Biochemistry and Biotechnology often publishes lists of patents and publications of special interest to readers.
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