Discrimination Between Competing Model Structures of Biological Systems in the Presence of Population Heterogeneity

Marc Martin-Casas, A. Mesbah
{"title":"Discrimination Between Competing Model Structures of Biological Systems in the Presence of Population Heterogeneity","authors":"Marc Martin-Casas, A. Mesbah","doi":"10.1109/LLS.2016.2644645","DOIUrl":null,"url":null,"abstract":"Computational models are useful for quantitative elucidation of the dynamical behavior of biological systems. Oftentimes, several competing models (i.e., hypotheses) are proposed to describe the underlying molecular mechanisms of a biological system. Selecting the most representative model is imperative for obtaining meaningful quantitative insights into the dynamics of the system of interest. However, the discrimination between competing models poses a significant challenge due to heterogeneity that is intrinsic to biological systems. This letter demonstrates the effectiveness of a probabilistic approach to optimal experiment design for model discrimination in the presence of time-invariant cell-to-cell differences within a cell population. The JAK2/STAT5 signaling pathway, which is involved in proliferation and differentiation of hematopoietic stem cells, is used as a case study.","PeriodicalId":87271,"journal":{"name":"IEEE life sciences letters","volume":"2 1","pages":"23-26"},"PeriodicalIF":0.0000,"publicationDate":"1900-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1109/LLS.2016.2644645","citationCount":"7","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IEEE life sciences letters","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/LLS.2016.2644645","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 7

Abstract

Computational models are useful for quantitative elucidation of the dynamical behavior of biological systems. Oftentimes, several competing models (i.e., hypotheses) are proposed to describe the underlying molecular mechanisms of a biological system. Selecting the most representative model is imperative for obtaining meaningful quantitative insights into the dynamics of the system of interest. However, the discrimination between competing models poses a significant challenge due to heterogeneity that is intrinsic to biological systems. This letter demonstrates the effectiveness of a probabilistic approach to optimal experiment design for model discrimination in the presence of time-invariant cell-to-cell differences within a cell population. The JAK2/STAT5 signaling pathway, which is involved in proliferation and differentiation of hematopoietic stem cells, is used as a case study.
种群异质性存在下生物系统竞争模式结构的区别
计算模型对于定量阐明生物系统的动力学行为是有用的。通常,提出几个相互竞争的模型(即假设)来描述生物系统的潜在分子机制。选择最具代表性的模型对于获得对感兴趣的系统动态的有意义的定量见解至关重要。然而,由于生物系统固有的异质性,竞争模型之间的歧视构成了重大挑战。这封信证明了在细胞群体中存在时不变细胞间差异的情况下,概率方法对模型判别的最佳实验设计的有效性。JAK2/STAT5信号通路,参与造血干细胞的增殖和分化,作为一个案例研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信