Dimensional Analysis

Jeffrey H Williams
{"title":"Dimensional Analysis","authors":"Jeffrey H Williams","doi":"10.1036/1097-8542.196000","DOIUrl":null,"url":null,"abstract":"Geometry has surprising consequences for the behaviour of matter. Living in three dimensions, we’re familiar with liquids that abruptly freeze into solids, or crystals under pressure that suddenly alter their molecular structures. Confine the same materials within a narrow, roughly one-dimensional (1D) wire, and everything changes. In one dimension, molecular interactions can’t overcome the disrupting influence of noise to create long-range order; liquids won’t freeze at any temperature. We know this from the theory of critical phenomena, which also reveals why geometry is so important — in effect, it controls the crucial supply lines for the forces of order in their battle against disrupting noise. In one dimension, one end of a chain can influence the other end only by interactions transmitted directly along the chain, so any disruption is necessarily ‘in the way’ and destroys the linking of behaviour in distant parts. In two or more dimensions, multiple paths connect any two points, and the number of possible paths grows rapidly with increasing dimension. Order then emerges out of chaos more readily. Clearly, all this has more to do with simple geometry than physics, and unsurprisingly its implications are evident elsewhere. A good example arises in evolutionary theory, especially in the effort to extend classical population genetics beyond the simplifying assumptions of early theorists such as Motoo Kimura or Ronald Fisher. They were mostly limited to studying evolution in ‘well mixed’ populations, in which each individual interacts in equal likelihood with any other, such as bacteria interacting in a well-stirred liquid. This assumption makes the maths easier, but is rarely, if ever, true in reality. Organisms often don’t move around enough to interact with more than a small fraction of others that live nearby. More generally, evolution itself, or the environment, frequently stirs up spatial structure by sorting genetic types preferentially into some regions, thereby strongly skewing subsequent interactions away from the well-mixed ideal. What does this have to do with dimension? As several researchers have recently noted, such departures from the well-mixed ideal frequently arise in situations in which evolution works in a lower-dimensional setting. In physics, ‘well mixed’ translates more or less as ‘mean field’, and mean field theory works well above a certain critical dimension, where noise and fluctuations have less influence. Below this dimension, we also know, it can be wildly inaccurate. One of the most common situations, as Kirill Korolev et al. discuss (Rev. Mod. Phys. 82, 1691–1718; 2010), emerges out of the expansion of a population. Say a bacterial colony is expanding by growth into a new food source. In the simplest picture of roughly circular surface growth, individuals at the expanding front exist in a roughly 1D world; they’re almost certainly the offspring of other individuals living in the same front. Experiments show that the boosted power of random fluctuations under such conditions lead to weird effects, including a tendency for strong genetic de-mixing. For example, Oskar Hallatschek et al. studied the spreading of Escherichia coli and Saccharomyces cerevisiae on Petri dishes (Proc. Natl Acad. Sci. USA 104, 19926–19930; 2007). They gave each microbe a (selectively neutral) genetic type — a gene encoding for a protein with one of two distinct fluorescence spectra, so that they could detect bacterial type optically. The interesting and typical outcome is that an initially well-mixed 50/50 population gradually segregates as it grows, so that the front has sharply defined homogeneous domains corresponding to the two types. This segregation merely reflects an enhanced role for random fluctuations in this low-dimensional system. Biologists have long known that random genetic change (genetic ‘drift’, as they say) is a powerful effect in evolution. Take a population mixed evenly, 50% green eyes and 50% blue, and split off a small subpopulation of 25 individuals: this new group may, by statistical fluctuations alone, be 80% green-eyed and the imbalance may then persist in the evolution of the new population (hence the term ‘founder effect’ for the strong loss of genetic diversity associated with the seeding of new populations from small groups). The same type of effect happens by dimensionality alone for expanding populations. Kirill Korolev and colleagues have studied the phenomenon analytically, using a ‘stepping stone’ model that breaks the 1D world into small regions, each of which can be considered well-mixed (http://arxiv. org/abs/0904.4625; 2009). Each area is subject to mutation, selection, genetic drift, and there’s also migration between neighbouring areas. Their work shows that the spatial segregation of individuals (characterized by two neutral alleles, as in the experiments just described) occurs in two stages. During the first stage, distinguishable domains emerge from the well-mixed population. Then, during a second stage, the boundaries of these regions move randomly and annihilate on collision; some of the domains vanish while others grow. This is all dramatically different from the well-mixed ideal. One of the interesting consequences, as Korolev et al. point out, is that this spontaneous genetic de-mixing means that natural selection acts only near these domain boundaries, where genetically distinct individuals are present in the same environment. As these boundaries involve only an extremely small fraction of the population, alleles giving evolutionarily disadvantageous traits may well persist in 1D populations long after they would have been wiped out in a well-mixed population. This is in direct analogy to the enhanced persistence of disorder in low-dimensional systems in physics. These results have been worked out before in the population-genetics literature, but the perspective from physics may be unifying. Dimension clearly matters more than we might naively think, as physicists have learned over the past 25 years, with some 50,000 papers published on low-dimensional systems. Perhaps biology awaits a similar explosion. As in physics, the effect of lower dimension is to disrupt natural ordering influences. This type of effect could also be more widespread, not only in expanding populations — think, for example, of a population living along a river bank, or otherwise confined to some linear structures (grasses, biological tubes in other organisms, or intersecting surfaces). We’re still only beginning to explore these consequences. And it may well be that dimension has influences at the human level as well. As Korolev et al. note, the basic model they’ve explored has links to the so-called voter model, relevant to the spread of opinions through a human population. It’s not a stretch at all to suppose dimensional aspects of basic social interactions. We may just be too close to the action to see it. ❐","PeriodicalId":91947,"journal":{"name":"Procedia manufacturing","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"16","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Procedia manufacturing","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1036/1097-8542.196000","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 16

Abstract

Geometry has surprising consequences for the behaviour of matter. Living in three dimensions, we’re familiar with liquids that abruptly freeze into solids, or crystals under pressure that suddenly alter their molecular structures. Confine the same materials within a narrow, roughly one-dimensional (1D) wire, and everything changes. In one dimension, molecular interactions can’t overcome the disrupting influence of noise to create long-range order; liquids won’t freeze at any temperature. We know this from the theory of critical phenomena, which also reveals why geometry is so important — in effect, it controls the crucial supply lines for the forces of order in their battle against disrupting noise. In one dimension, one end of a chain can influence the other end only by interactions transmitted directly along the chain, so any disruption is necessarily ‘in the way’ and destroys the linking of behaviour in distant parts. In two or more dimensions, multiple paths connect any two points, and the number of possible paths grows rapidly with increasing dimension. Order then emerges out of chaos more readily. Clearly, all this has more to do with simple geometry than physics, and unsurprisingly its implications are evident elsewhere. A good example arises in evolutionary theory, especially in the effort to extend classical population genetics beyond the simplifying assumptions of early theorists such as Motoo Kimura or Ronald Fisher. They were mostly limited to studying evolution in ‘well mixed’ populations, in which each individual interacts in equal likelihood with any other, such as bacteria interacting in a well-stirred liquid. This assumption makes the maths easier, but is rarely, if ever, true in reality. Organisms often don’t move around enough to interact with more than a small fraction of others that live nearby. More generally, evolution itself, or the environment, frequently stirs up spatial structure by sorting genetic types preferentially into some regions, thereby strongly skewing subsequent interactions away from the well-mixed ideal. What does this have to do with dimension? As several researchers have recently noted, such departures from the well-mixed ideal frequently arise in situations in which evolution works in a lower-dimensional setting. In physics, ‘well mixed’ translates more or less as ‘mean field’, and mean field theory works well above a certain critical dimension, where noise and fluctuations have less influence. Below this dimension, we also know, it can be wildly inaccurate. One of the most common situations, as Kirill Korolev et al. discuss (Rev. Mod. Phys. 82, 1691–1718; 2010), emerges out of the expansion of a population. Say a bacterial colony is expanding by growth into a new food source. In the simplest picture of roughly circular surface growth, individuals at the expanding front exist in a roughly 1D world; they’re almost certainly the offspring of other individuals living in the same front. Experiments show that the boosted power of random fluctuations under such conditions lead to weird effects, including a tendency for strong genetic de-mixing. For example, Oskar Hallatschek et al. studied the spreading of Escherichia coli and Saccharomyces cerevisiae on Petri dishes (Proc. Natl Acad. Sci. USA 104, 19926–19930; 2007). They gave each microbe a (selectively neutral) genetic type — a gene encoding for a protein with one of two distinct fluorescence spectra, so that they could detect bacterial type optically. The interesting and typical outcome is that an initially well-mixed 50/50 population gradually segregates as it grows, so that the front has sharply defined homogeneous domains corresponding to the two types. This segregation merely reflects an enhanced role for random fluctuations in this low-dimensional system. Biologists have long known that random genetic change (genetic ‘drift’, as they say) is a powerful effect in evolution. Take a population mixed evenly, 50% green eyes and 50% blue, and split off a small subpopulation of 25 individuals: this new group may, by statistical fluctuations alone, be 80% green-eyed and the imbalance may then persist in the evolution of the new population (hence the term ‘founder effect’ for the strong loss of genetic diversity associated with the seeding of new populations from small groups). The same type of effect happens by dimensionality alone for expanding populations. Kirill Korolev and colleagues have studied the phenomenon analytically, using a ‘stepping stone’ model that breaks the 1D world into small regions, each of which can be considered well-mixed (http://arxiv. org/abs/0904.4625; 2009). Each area is subject to mutation, selection, genetic drift, and there’s also migration between neighbouring areas. Their work shows that the spatial segregation of individuals (characterized by two neutral alleles, as in the experiments just described) occurs in two stages. During the first stage, distinguishable domains emerge from the well-mixed population. Then, during a second stage, the boundaries of these regions move randomly and annihilate on collision; some of the domains vanish while others grow. This is all dramatically different from the well-mixed ideal. One of the interesting consequences, as Korolev et al. point out, is that this spontaneous genetic de-mixing means that natural selection acts only near these domain boundaries, where genetically distinct individuals are present in the same environment. As these boundaries involve only an extremely small fraction of the population, alleles giving evolutionarily disadvantageous traits may well persist in 1D populations long after they would have been wiped out in a well-mixed population. This is in direct analogy to the enhanced persistence of disorder in low-dimensional systems in physics. These results have been worked out before in the population-genetics literature, but the perspective from physics may be unifying. Dimension clearly matters more than we might naively think, as physicists have learned over the past 25 years, with some 50,000 papers published on low-dimensional systems. Perhaps biology awaits a similar explosion. As in physics, the effect of lower dimension is to disrupt natural ordering influences. This type of effect could also be more widespread, not only in expanding populations — think, for example, of a population living along a river bank, or otherwise confined to some linear structures (grasses, biological tubes in other organisms, or intersecting surfaces). We’re still only beginning to explore these consequences. And it may well be that dimension has influences at the human level as well. As Korolev et al. note, the basic model they’ve explored has links to the so-called voter model, relevant to the spread of opinions through a human population. It’s not a stretch at all to suppose dimensional aspects of basic social interactions. We may just be too close to the action to see it. ❐
量纲分析
几何学对物质的行为有着惊人的影响。生活在三维空间中,我们熟悉液体突然冻结成固体,或者在压力下突然改变分子结构的晶体。将相同的材料限制在一个狭窄的,大致一维(1D)的电线中,一切都改变了。在一维中,分子间的相互作用不能克服噪声的干扰影响而产生长程有序;液体在任何温度下都不会结冰。我们从临界现象理论中知道这一点,这也揭示了为什么几何如此重要——实际上,它控制着秩序力量对抗干扰噪音的关键补给线。在一个维度中,链的一端只能通过直接沿着链传递的相互作用来影响另一端,因此任何破坏都必然是“拦路”,并破坏远距离部分之间的行为联系。在二维或多维空间中,有多条路径连接任意两个点,并且可能路径的数量随着维度的增加而迅速增加。这样,秩序就更容易从混乱中出现。显然,所有这些都与简单的几何有关,而不是物理,毫不奇怪,它的含义在其他地方也很明显。一个很好的例子出现在进化理论中,特别是在努力扩展经典种群遗传学,超越早期理论家如Motoo Kimura或Ronald Fisher的简化假设。他们大多局限于研究“混合良好”群体的进化,在这种群体中,每个个体与其他个体相互作用的可能性相等,比如细菌在搅拌良好的液体中相互作用。这种假设使数学计算更容易,但在现实中很少是正确的。生物通常不会到处移动,与附近的一小部分生物相互作用。更一般地说,进化本身或环境,经常通过将基因类型优先分类到某些区域来搅动空间结构,从而强烈地扭曲了随后的相互作用,使其远离混合良好的理想状态。这和维度有什么关系?正如几位研究人员最近指出的那样,这种与混合良好的理想的背离经常出现在进化在低维度环境中工作的情况下。在物理学中,“混合良好”或多或少可以翻译为“平均场”,而平均场理论在某个临界维度上工作得很好,在这个维度上噪声和波动的影响较小。我们也知道,在这个维度以下,它可能非常不准确。最常见的情况之一,正如Kirill Korolev等人所讨论的(Rev. Mod. Phys. 82, 1691-1718;2010年),出现了人口的扩张。比如说,一个细菌菌落正在通过生长扩展成一种新的食物来源。在最简单的大致圆形表面增长图中,扩张前沿的个体存在于一个大致为一维的世界中;它们几乎肯定是生活在同一前线的其他个体的后代。实验表明,在这种条件下,随机波动的增强功率会导致奇怪的效应,包括强烈的基因分离趋势。例如,Oskar Hallatschek等人研究了大肠杆菌和酿酒酵母在培养皿中的传播(Proc. Natl Acad. Sci.)。美国104,19926-19930;2007)。他们给每个微生物一个(选择性中性的)遗传类型——一个编码蛋白质的基因,具有两种不同的荧光光谱之一,这样他们就可以光学地检测细菌类型。有趣和典型的结果是,最初混合良好的50/50人口随着增长而逐渐分离,因此前线有明确定义的对应于两种类型的同质域。这种分离仅仅反映了在这个低维系统中随机波动的增强作用。生物学家早就知道,随机的基因变化(他们称之为基因“漂变”)在进化过程中具有强大的作用。以一个混合均匀的种群为例,50%是绿眼睛,50%是蓝眼睛,并将其分成25个个体的小亚种群:这个新群体可能仅凭统计波动就有80%是绿眼睛,这种不平衡可能会在新种群的进化中持续存在(因此,“创始人效应”一词是指与从小群体中播种新种群相关的遗传多样性的强烈丧失)。同样的效应也发生在人口扩张的维度上。基里尔·科罗廖夫(Kirill Korolev)和他的同事们分析地研究了这一现象,他们使用了一个“踏脚石”模型,将一维世界分解成小区域,每个区域都可以被认为是混合良好的(http://arxiv)。org/abs/0904.4625;2009)。每个地区都受到突变、选择、基因漂变的影响,邻近地区之间也存在迁移。他们的工作表明,个体的空间隔离(以两个中性等位基因为特征,正如刚刚描述的实验)发生在两个阶段。 在第一阶段,从混合良好的种群中出现可区分的域。然后,在第二阶段,这些区域的边界随机移动并在碰撞时湮灭;一些域消失了,而另一些域却在增长。这与混合良好的理想截然不同。正如Korolev等人指出的那样,其中一个有趣的结果是,这种自发的基因分离意味着自然选择只在这些区域边界附近发生作用,在这些区域边界附近,遗传上不同的个体存在于同一环境中。由于这些边界只涉及到极小部分的种群,所以在混合良好的种群中,具有进化上不利特征的等位基因可能会在单一种群中持续存在很长时间。这直接类比于物理学中低维系统中无序的增强持久性。这些结果之前已经在种群遗传学文献中得到了解决,但从物理学的角度来看可能是统一的。维度显然比我们天真地认为的更重要,正如物理学家在过去25年里所了解到的那样,大约有5万篇关于低维系统的论文发表。也许生物学界也在等待着类似的大爆发。正如在物理学中一样,低维的影响是破坏自然有序的影响。这种类型的影响也可以是更广泛的,不仅仅是在不断扩大的种群中——例如,一个种群生活在河岸上,或者局限于一些线性结构(草,其他生物的生物管,或相交的表面)。我们对这些后果的探索才刚刚开始。很可能这个维度在人类层面上也有影响。正如Korolev等人所指出的,他们所探索的基本模型与所谓的选民模型(voter model)有关,该模型与意见在人群中的传播有关。假设基本社会互动的维度并不是一种延伸。我们可能只是离行动太近而看不到它。❐
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