Computer-Aided Diagnosis of Complications After Liver Transplantation Based on Transfer Learning.

IF 3.9 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Ying Zhang, Chenyuan Shangguan, Xuena Zhang, Jialin Ma, Jiyuan He, Meng Jia, Na Chen
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Abstract

Liver transplantation is one of the most effective treatments for acute liver failure, cirrhosis, and even liver cancer. The prediction of postoperative complications is of great significance for liver transplantation. However, the existing prediction methods based on traditional machine learning are often unavailable or unreliable due to the insufficient amount of real liver transplantation data. Therefore, we propose a new framework to increase the accuracy of computer-aided diagnosis of complications after liver transplantation with transfer learning, which can handle small-scale but high-dimensional data problems. Furthermore, since data samples are often high dimensional in the real world, capturing key features that influence postoperative complications can help make the correct diagnosis for patients. So, we also introduce the SHapley Additive exPlanation (SHAP) method into our framework for exploring the key features of postoperative complications. We used data obtained from 425 patients with 456 features in our experiments. Experimental results show that our approach outperforms all compared baseline methods in predicting postoperative complications. In our work, the average precision, the mean recall, and the mean F1 score reach 91.22%, 91.70%, and 91.18%, respectively.

Abstract Image

基于迁移学习的肝移植术后并发症计算机辅助诊断。
肝移植是治疗急性肝功能衰竭、肝硬化甚至癌症最有效的方法之一。术后并发症的预测对肝移植具有重要意义。然而,由于真实肝移植数据量不足,现有的基于传统机器学习的预测方法往往不可用或不可靠。因此,我们提出了一个新的框架,通过迁移学习来提高肝移植后并发症计算机辅助诊断的准确性,该框架可以处理小规模但高维的数据问题。此外,由于数据样本在现实世界中往往是高维的,捕捉影响术后并发症的关键特征有助于为患者做出正确诊断。因此,我们还将SHapley加性exPlanation(SHAP)方法引入我们的框架中,以探索术后并发症的关键特征。在我们的实验中,我们使用了425名具有456个特征的患者的数据。实验结果表明,我们的方法在预测术后并发症方面优于所有比较的基线方法。在我们的工作中,平均精确度、平均召回率和平均F1得分分别达到91.22%、91.70%和91.18%。
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来源期刊
Interdisciplinary Sciences: Computational Life Sciences
Interdisciplinary Sciences: Computational Life Sciences MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
8.60
自引率
4.20%
发文量
55
期刊介绍: Interdisciplinary Sciences--Computational Life Sciences aims to cover the most recent and outstanding developments in interdisciplinary areas of sciences, especially focusing on computational life sciences, an area that is enjoying rapid development at the forefront of scientific research and technology. The journal publishes original papers of significant general interest covering recent research and developments. Articles will be published rapidly by taking full advantage of internet technology for online submission and peer-reviewing of manuscripts, and then by publishing OnlineFirstTM through SpringerLink even before the issue is built or sent to the printer. The editorial board consists of many leading scientists with international reputation, among others, Luc Montagnier (UNESCO, France), Dennis Salahub (University of Calgary, Canada), Weitao Yang (Duke University, USA). Prof. Dongqing Wei at the Shanghai Jiatong University is appointed as the editor-in-chief; he made important contributions in bioinformatics and computational physics and is best known for his ground-breaking works on the theory of ferroelectric liquids. With the help from a team of associate editors and the editorial board, an international journal with sound reputation shall be created.
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