{"title":"Pan-cancer analysis reveals the relationship between SLC47A1 immune infiltration and clinical prognosis of human tumors","authors":"Nan HUANG , Zheng LIU , Ronghui LI","doi":"10.1016/S2707-3688(23)00098-5","DOIUrl":null,"url":null,"abstract":"<div><h3>Objective</h3><p>Objective To analyze the differential expression and prognosis of Solute Carrier Family 47 Member 1 (<em>SLC47A1</em>) in human pan-cancer using bioinformatic methods to explore the prognostic value of <em>SLC47A1</em> for human pan-cancer and to determine its immune regulatory role.</p></div><div><h3>Methods</h3><p>The Cancer Genome Atlas (TCGA) pan-cancer database was used to analyze the diagnostic and prognostic value of <em>SLC47A1,</em> as well as its expression patterns. Pearson correlation analysis was used to evaluate the relationship between <em>SLC47A1</em> and stromal scores, immune scores, tumor mutation burden (TMB), and microsatellite instability (MSI). The correlation between <em>SLC47A1</em> and specific tumor immune subtypes was analyzed using the Tumor-Immune System Interactions Database (TISIDB). Analysis of differential methylation of <em>SLC47A1</em> and prognostic analyses were performed using the Disease Meth and TCGA Pan-Cancer databases.</p></div><div><h3>Results</h3><p><em>SLC47A1</em> was abnormally expressed in 17 tumors and shows low expression levels in 11 tumor tissues. Low expression of <em>SLC47A1</em> was associated with poor prognosis and diagnosis. Moreover, <em>SLC47A1</em> was also involved in tumor microenvironment regulation. <em>SLC47A1</em> methylation was disordered in 15 tumors, and disordered methylation was associated with survival.</p></div><div><h3>Conclusion</h3><p>Overall, these results indicate that <em>SLC47A1</em> may serve as an important prognostic biomarker and may correlate with tumor immunity in human pan-cancer.</p></div>","PeriodicalId":100787,"journal":{"name":"Journal of Holistic Integrative Pharmacy","volume":"4 1","pages":"Pages 103-118"},"PeriodicalIF":0.0000,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Holistic Integrative Pharmacy","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2707368823000985","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Objective
Objective To analyze the differential expression and prognosis of Solute Carrier Family 47 Member 1 (SLC47A1) in human pan-cancer using bioinformatic methods to explore the prognostic value of SLC47A1 for human pan-cancer and to determine its immune regulatory role.
Methods
The Cancer Genome Atlas (TCGA) pan-cancer database was used to analyze the diagnostic and prognostic value of SLC47A1, as well as its expression patterns. Pearson correlation analysis was used to evaluate the relationship between SLC47A1 and stromal scores, immune scores, tumor mutation burden (TMB), and microsatellite instability (MSI). The correlation between SLC47A1 and specific tumor immune subtypes was analyzed using the Tumor-Immune System Interactions Database (TISIDB). Analysis of differential methylation of SLC47A1 and prognostic analyses were performed using the Disease Meth and TCGA Pan-Cancer databases.
Results
SLC47A1 was abnormally expressed in 17 tumors and shows low expression levels in 11 tumor tissues. Low expression of SLC47A1 was associated with poor prognosis and diagnosis. Moreover, SLC47A1 was also involved in tumor microenvironment regulation. SLC47A1 methylation was disordered in 15 tumors, and disordered methylation was associated with survival.
Conclusion
Overall, these results indicate that SLC47A1 may serve as an important prognostic biomarker and may correlate with tumor immunity in human pan-cancer.